mRNA_L-digitata_M_contig100544.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A222E3E8_9RHOB (Homocysteine S-methyltransferase n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E3E8_9RHOB) HSP 1 Score: 503 bits (1295), Expect = 6.010e-179 Identity = 260/266 (97.74%), Postives = 261/266 (98.12%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 798
EVHRDYADAGATVATTNTYAIHRDRLRGGA NHYAADGATIPDMQDQFNALHHAALAEA AVRDRC LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGE LAEAARIASEADAALANCSAPEAMPAALGALSG+GVPLGAYANAFTMITKAFLDGGSTAASLQARRDM PAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT
Sbjct: 41 EVHRDYADAGATVATTNTYAIHRDRLRGGAGNHYAADGATIPDMQDQFNALHHAALAEADAVRDRCRLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEPLAEAARIASEADAALANCSAPEAMPAALGALSGSGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMSPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 306
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A239G421_9RHOB (Homocysteine S-methyltransferase n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239G421_9RHOB) HSP 1 Score: 456 bits (1172), Expect = 3.280e-160 Identity = 234/266 (87.97%), Postives = 245/266 (92.11%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 798
EVHRDYADAGAT+ATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQF ALH AALAEA VRDRC +AGSIGPLGASYRADLHPD++TAIPLY EVA LLA R DLL+FETI SLDAARACL+AGR+TDKPVWLAFTVDDEDGTRLRSGE LAEAARIASEADA LANCSAPEAMPAAL ALS AGVP GAYANAFT+ITKAFL+GGSTA SLQARRDMGP +Y HAMTW+DAGATIVGGCCET PAHIAEIARRLRAAGH IT
Sbjct: 41 EVHRDYADAGATLATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFEALHQAALAEAETVRDRCRVAGSIGPLGASYRADLHPDVETAIPLYTEVATLLANRADLLLFETIVSLDAARACLSAGRKTDKPVWLAFTVDDEDGTRLRSGEPLAEAARIASEADAVLANCSAPEAMPAALEALSQAGVPFGAYANAFTLITKAFLEGGSTAESLQARRDMGPEVYGRHAMTWVDAGATIVGGCCETSPAHIAEIARRLRAAGHVIT 306
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A0B3SXJ9_9RHOB (Homocysteine S-methyltransferase family protein n=8 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SXJ9_9RHOB) HSP 1 Score: 395 bits (1014), Expect = 3.670e-136 Identity = 205/265 (77.36%), Postives = 223/265 (84.15%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
EVHRDYA AGA VATTNTYAIHRDRLRGGASNHYAADG +PD++ +F LH AAL EAGAVRDR +AGSIGPLGASYRADLHP+ AIPLYAEVA LLAP VDLL+FETI SL AARACL AGRQT PVWLAFTVDDEDG+RLRSGE ++EA RIA EADA LANCSAPEAMPAAL A S P GAYANAFT +TK ++ GG+TAA+L ARRDMGP YA+H M W+D GA+IVGGCCET PAHIAEIARRLRAAGHEI
Sbjct: 41 EVHRDYARAGARVATTNTYAIHRDRLRGGASNHYAADGTELPDLEARFADLHRAALEEAGAVRDRGRIAGSIGPLGASYRADLHPEEAEAIPLYAEVAKLLAPSVDLLLFETIPSLAAARACLAAGRQTGLPVWLAFTVDDEDGSRLRSGEPVSEAVRIAQEADAVLANCSAPEAMPAALDAFSAGDRPFGAYANAFTTLTKEYVAGGTTAAALSARRDMGPEAYADHVMDWVDRGASIVGGCCETNPAHIAEIARRLRAAGHEI 305
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A0W7WQ63_9RHOB (Homocysteine methyltransferase n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WQ63_9RHOB) HSP 1 Score: 377 bits (967), Expect = 5.160e-129 Identity = 194/265 (73.21%), Postives = 221/265 (83.40%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
EVH +ADAGA+VATTN+YA+HRDRLRGG+SNHYA+D +PDM+DQ AL AAL A VRDR +AG+IGPLGASYRADLHPD A+PLYAEVA +LAPRVDLL+FETI S+ AARACL+AGRQT +PVWL+FTVDD +G RLRSGE LAE +A+ ADAAL NCSAPEAMPAAL AL+ AGVP+GAYANAF +TK F+ GG+TAASL ARRDMGP YA+H M W+ GATIVGGCCETGPAHIAEIARRLRAAGH I
Sbjct: 41 EVHLAFADAGASVATTNSYALHRDRLRGGSSNHYASDDVVLPDMEDQLGALLGAALDAAEPVRDRGRIAGAIGPLGASYRADLHPDEAAAVPLYAEVAQVLAPRVDLLLFETIPSVMAARACLSAGRQTGRPVWLSFTVDDTEGDRLRSGERLAEVVEVAAAADAALVNCSAPEAMPAALDALAPAGVPMGAYANAFATLTKDFIAGGATAASLSARRDMGPEAYADHVMGWVAQGATIVGGCCETGPAHIAEIARRLRAAGHAI 305
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A238J9I2_9RHOB (Homocysteine S-methyltransferase n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J9I2_9RHOB) HSP 1 Score: 356 bits (913), Expect = 9.250e-121 Identity = 187/268 (69.78%), Postives = 217/268 (80.97%), Query Frame = 1
Query: 4 VHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCC---LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASE-ADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
VH DY AGA+VATTNTYAIHRDRLRG ASNHYA DGA +P+++D+F ALH AAL EA A RD +AGSIGPLGASYRADLHPD DTA+PLY EVAGL+ PRVD+L+ ET+ASLDAAR+ L +KPVW++ T+DDEDGT LRSGE +A+ A I + A AALANCSAPEAMPAAL L+ AG+P GAY N FTMITKAFL+GG+TA L+AR+DMGP YA+HAM+W+D GATI+GGCCETGPAHIAEIARRLR A H I
Sbjct: 42 VHEDYYRAGASVATTNTYAIHRDRLRG-ASNHYAVDGAEMPNIEDKFEALHDAALTEACAARDAVGSGRIAGSIGPLGASYRADLHPDHDTAVPLYREVAGLIGPRVDVLLCETVASLDAARSALVGALAAEKPVWISVTIDDEDGTLLRSGEKVADLAAILKDGAAAALANCSAPEAMPAALEQLAKAGLPFGAYGNGFTMITKAFLEGGTTAGDLRARQDMGPENYADHAMSWVDMGATILGGCCETGPAHIAEIARRLREAEHRI 308
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A4S4NKI2_9RHOB (Homocysteine S-methyltransferase family protein n=1 Tax=Aliishimia ponticola TaxID=2499833 RepID=A0A4S4NKI2_9RHOB) HSP 1 Score: 352 bits (903), Expect = 2.760e-119 Identity = 181/264 (68.56%), Postives = 210/264 (79.55%), Query Frame = 1
Query: 4 VHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
VH DYADAGATVATTNTYA+HRDRLRGG SNHYAA+G +P+M+DQ AL AL VR+RC +AGSIGP+GASYRADL PD D A+ +YAEVA LLAPRVDLL+FET+ S+ A RA L AGRQT++PVWL FTVDD DG RLRSGE +AEAA IA EADA L NCSAPEA+PAAL AL+ + PLGAYAN FT IT+AF+ G +TA +L AR D+ YA+HAM W+D GATI+GGCCE GPAHIAE+A RLRA GH +
Sbjct: 42 VHTDYADAGATVATTNTYALHRDRLRGGDSNHYAAEGTALPNMEDQLGALITTALDAVEPVRNRCRVAGSIGPIGASYRADLMPDHDEAVAIYAEVAKLLAPRVDLLLFETLPSIAAGRAALAAGRQTNRPVWLCFTVDDRDGHRLRSGEPVAEAATIAQEADAVLINCSAPEAIPAALEALATSNRPLGAYANGFTEITEAFIKGNTTAKALTARSDLSAQAYADHAMGWLDHGATILGGCCEVGPAHIAELANRLRAKGHSL 305
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A8J7WCL8_9RHOB (Homocysteine S-methyltransferase family protein n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J7WCL8_9RHOB) HSP 1 Score: 304 bits (779), Expect = 1.370e-100 Identity = 172/270 (63.70%), Postives = 190/270 (70.37%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVR---DRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASE-ADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 798
+VH DY AGATVATTNTYAIHRDRLR ++D+F ALHHAALAEA A R + +AGSIGPL ASYR D+HP A+PLYAEVA +LAP VDL I ET+ASL ARA L R T KPVWLA T+DDEDGTRLRSGE + EA IA + A A LANCSAPEAMPAAL + +P GAYAN FT ITK FL T +LQ RRDMGP IYA H M W+ GATIVGGCCETGPAHIAEIARRLR AG+ IT
Sbjct: 41 QVHEDYFAAGATVATTNTYAIHRDRLRRAG-------------IEDRFEALHHAALAEAQAARGDRENLRIAGSIGPLAASYRPDIHPAHADAVPLYAEVAQILAPGVDLFICETVASLAHARAALEGARTTGKPVWLALTLDDEDGTRLRSGEPVDEALAIAQDGATAILANCSAPEAMPAALMRFARTTLPFGAYANGFTRITKEFLQDAPTVDALQPRRDMGPEIYASHVMAWVQMGATIVGGCCETGPAHIAEIARRLRVAGYTIT 297
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: UPI001ADFE933 (homocysteine S-methyltransferase family protein n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001ADFE933) HSP 1 Score: 301 bits (771), Expect = 2.250e-99 Identity = 172/269 (63.94%), Postives = 192/269 (71.38%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRD-RCC--LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAAL-ANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
+VH DY AGATVA TNTYA+HRDRL M+DQF AL AALAEA + RD C +AGSIGPLGASYR D+HP A+PLYAEVAG+LAP DLLI ET+ASL+ ARA L R PVWLA TVDDEDGTRLRSGE ++E IA + AAL ANC+APEAMPAAL L+ AG+P GAYANAFTMITK FL T +L RRDMGP IYA+H M W+D GATIVGGCCETGP HIAEIARRLR GH+I
Sbjct: 41 QVHTDYFAAGATVAMTNTYALHRDRL-------------VKAGMEDQFPALLRAALAEAESARDAHGCGRIAGSIGPLGASYRPDIHPPHAEAVPLYAEVAGMLAPGCDLLICETVASLNHARAVLEGARGMGLPVWLAVTVDDEDGTRLRSGEPVSEVGPIARDGAAALLANCAAPEAMPAALAHLAKAGLPFGAYANAFTMITKDFLKDSPTVDALTRRRDMGPEIYADHVMRWLDCGATIVGGCCETGPLHIAEIARRLREVGHKI 296
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A221K3Y9_9RHOB (Homocysteine S-methyltransferase n=1 Tax=Sulfitobacter pseudonitzschiae TaxID=1402135 RepID=A0A221K3Y9_9RHOB) HSP 1 Score: 298 bits (762), Expect = 4.870e-98 Identity = 172/268 (64.18%), Postives = 187/268 (69.78%), Query Frame = 1
Query: 1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCC--LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIAS-EADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
EVHRD+ AGAT+ATTNTYAIHRDRL G DM DQFN L AL EA RD LAG+IGPL ASYR DLHPD DTAIPLYAEVAGLLAP DLLI ET+ASLD AR+ L Q KPVWLA TVDD DGT+LRSGE + + IAS +A A L NCSAPEA+PAAL LS +P GAYAN F IT+ FL T A LQ R D+ PA YA+H M WIDAGATIVGGCCE GPAHIAEIARRL AAGH +
Sbjct: 41 EVHRDFTAAGATIATTNTYAIHRDRLVG-------------TDMDDQFNTLIDRALTEA---RDSNAPRLAGAIGPLVASYRPDLHPDPDTAIPLYAEVAGLLAPTCDLLICETVASLDHARSVLVGASQAGKPVWLALTVDDRDGTKLRSGEPVQDILPIASGKAAAILINCSAPEAIPAALAILSQGALPFGAYANGFQRITEEFLQTRPTVADLQVRHDLTPATYADHVMAWIDAGATIVGGCCEVGPAHIAEIARRLIAAGHTL 292
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: UPI001C3808FA (homocysteine S-methyltransferase family protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C3808FA) HSP 1 Score: 293 bits (750), Expect = 3.440e-96 Identity = 165/268 (61.57%), Postives = 190/268 (70.90%), Query Frame = 1
Query: 4 VHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVR---DRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASE-ADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
VH DY AGAT+ATTNTYA+HRDRL A G ++D++ AL AAL EA A R +AGS+GPLGASYR D+HPD TA+PLY E+ LAPRVDL++FET+AS+D ARA + AG+ KPVW+A TVDDEDG LRSGE +A+ + ++ ADA LANCSAPEAMP AL L G+P GAY NAFT ITK FL T +L ARRDMGP YA HAMTWI GATIVGGCCETGPAHIAEIA RLRAAGH I
Sbjct: 42 VHADYFAAGATIATTNTYALHRDRL--------APAG-----IEDEWPALVDAALDEAAAARVAHGAGRIAGSVGPLGASYRPDIHPDHATAVPLYRELVAALAPRVDLVLFETVASVDHARAAVAAGQGCGKPVWIAVTVDDEDGRHLRSGEPVADVVTVLADGADAVLANCSAPEAMPKALEILMKTGLPFGAYGNAFTQITKDFLKDRPTVDALSARRDMGPEAYAGHAMTWIGQGATIVGGCCETGPAHIAEIAARLRAAGHAI 296 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100544.1.1 >prot_L-digitata_M_contig100544.1.1 ID=prot_L-digitata_M_contig100544.1.1|Name=mRNA_L-digitata_M_contig100544.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=267bp EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNAback to top mRNA from alignment at L-digitata_M_contig100544:1..801+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100544.1.1 ID=mRNA_L-digitata_M_contig100544.1.1|Name=mRNA_L-digitata_M_contig100544.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig100544:1..801+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100544:1..801+ >mRNA_L-digitata_M_contig100544.1.1 ID=mRNA_L-digitata_M_contig100544.1.1|Name=mRNA_L-digitata_M_contig100544.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig100544:1..801+ (Laminaria digitata LdigPH10_18mv male)back to top |