mRNA_L-digitata_M_contig100544.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100544.1.1
Unique NamemRNA_L-digitata_M_contig100544.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A222E3E8_9RHOB (Homocysteine S-methyltransferase n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E3E8_9RHOB)

HSP 1 Score: 503 bits (1295), Expect = 6.010e-179
Identity = 260/266 (97.74%), Postives = 261/266 (98.12%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 798
            EVHRDYADAGATVATTNTYAIHRDRLRGGA NHYAADGATIPDMQDQFNALHHAALAEA AVRDRC LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGE LAEAARIASEADAALANCSAPEAMPAALGALSG+GVPLGAYANAFTMITKAFLDGGSTAASLQARRDM PAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT
Sbjct:   41 EVHRDYADAGATVATTNTYAIHRDRLRGGAGNHYAADGATIPDMQDQFNALHHAALAEADAVRDRCRLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEPLAEAARIASEADAALANCSAPEAMPAALGALSGSGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMSPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 306          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A239G421_9RHOB (Homocysteine S-methyltransferase n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239G421_9RHOB)

HSP 1 Score: 456 bits (1172), Expect = 3.280e-160
Identity = 234/266 (87.97%), Postives = 245/266 (92.11%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 798
            EVHRDYADAGAT+ATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQF ALH AALAEA  VRDRC +AGSIGPLGASYRADLHPD++TAIPLY EVA LLA R DLL+FETI SLDAARACL+AGR+TDKPVWLAFTVDDEDGTRLRSGE LAEAARIASEADA LANCSAPEAMPAAL ALS AGVP GAYANAFT+ITKAFL+GGSTA SLQARRDMGP +Y  HAMTW+DAGATIVGGCCET PAHIAEIARRLRAAGH IT
Sbjct:   41 EVHRDYADAGATLATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFEALHQAALAEAETVRDRCRVAGSIGPLGASYRADLHPDVETAIPLYTEVATLLANRADLLLFETIVSLDAARACLSAGRKTDKPVWLAFTVDDEDGTRLRSGEPLAEAARIASEADAVLANCSAPEAMPAALEALSQAGVPFGAYANAFTLITKAFLEGGSTAESLQARRDMGPEVYGRHAMTWVDAGATIVGGCCETSPAHIAEIARRLRAAGHVIT 306          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A0B3SXJ9_9RHOB (Homocysteine S-methyltransferase family protein n=8 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SXJ9_9RHOB)

HSP 1 Score: 395 bits (1014), Expect = 3.670e-136
Identity = 205/265 (77.36%), Postives = 223/265 (84.15%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            EVHRDYA AGA VATTNTYAIHRDRLRGGASNHYAADG  +PD++ +F  LH AAL EAGAVRDR  +AGSIGPLGASYRADLHP+   AIPLYAEVA LLAP VDLL+FETI SL AARACL AGRQT  PVWLAFTVDDEDG+RLRSGE ++EA RIA EADA LANCSAPEAMPAAL A S    P GAYANAFT +TK ++ GG+TAA+L ARRDMGP  YA+H M W+D GA+IVGGCCET PAHIAEIARRLRAAGHEI
Sbjct:   41 EVHRDYARAGARVATTNTYAIHRDRLRGGASNHYAADGTELPDLEARFADLHRAALEEAGAVRDRGRIAGSIGPLGASYRADLHPEEAEAIPLYAEVAKLLAPSVDLLLFETIPSLAAARACLAAGRQTGLPVWLAFTVDDEDGSRLRSGEPVSEAVRIAQEADAVLANCSAPEAMPAALDAFSAGDRPFGAYANAFTTLTKEYVAGGTTAAALSARRDMGPEAYADHVMDWVDRGASIVGGCCETNPAHIAEIARRLRAAGHEI 305          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A0W7WQ63_9RHOB (Homocysteine methyltransferase n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WQ63_9RHOB)

HSP 1 Score: 377 bits (967), Expect = 5.160e-129
Identity = 194/265 (73.21%), Postives = 221/265 (83.40%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            EVH  +ADAGA+VATTN+YA+HRDRLRGG+SNHYA+D   +PDM+DQ  AL  AAL  A  VRDR  +AG+IGPLGASYRADLHPD   A+PLYAEVA +LAPRVDLL+FETI S+ AARACL+AGRQT +PVWL+FTVDD +G RLRSGE LAE   +A+ ADAAL NCSAPEAMPAAL AL+ AGVP+GAYANAF  +TK F+ GG+TAASL ARRDMGP  YA+H M W+  GATIVGGCCETGPAHIAEIARRLRAAGH I
Sbjct:   41 EVHLAFADAGASVATTNSYALHRDRLRGGSSNHYASDDVVLPDMEDQLGALLGAALDAAEPVRDRGRIAGAIGPLGASYRADLHPDEAAAVPLYAEVAQVLAPRVDLLLFETIPSVMAARACLSAGRQTGRPVWLSFTVDDTEGDRLRSGERLAEVVEVAAAADAALVNCSAPEAMPAALDALAPAGVPMGAYANAFATLTKDFIAGGATAASLSARRDMGPEAYADHVMGWVAQGATIVGGCCETGPAHIAEIARRLRAAGHAI 305          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A238J9I2_9RHOB (Homocysteine S-methyltransferase n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J9I2_9RHOB)

HSP 1 Score: 356 bits (913), Expect = 9.250e-121
Identity = 187/268 (69.78%), Postives = 217/268 (80.97%), Query Frame = 1
Query:    4 VHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCC---LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASE-ADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            VH DY  AGA+VATTNTYAIHRDRLRG ASNHYA DGA +P+++D+F ALH AAL EA A RD      +AGSIGPLGASYRADLHPD DTA+PLY EVAGL+ PRVD+L+ ET+ASLDAAR+ L      +KPVW++ T+DDEDGT LRSGE +A+ A I  + A AALANCSAPEAMPAAL  L+ AG+P GAY N FTMITKAFL+GG+TA  L+AR+DMGP  YA+HAM+W+D GATI+GGCCETGPAHIAEIARRLR A H I
Sbjct:   42 VHEDYYRAGASVATTNTYAIHRDRLRG-ASNHYAVDGAEMPNIEDKFEALHDAALTEACAARDAVGSGRIAGSIGPLGASYRADLHPDHDTAVPLYREVAGLIGPRVDVLLCETVASLDAARSALVGALAAEKPVWISVTIDDEDGTLLRSGEKVADLAAILKDGAAAALANCSAPEAMPAALEQLAKAGLPFGAYGNGFTMITKAFLEGGTTAGDLRARQDMGPENYADHAMSWVDMGATILGGCCETGPAHIAEIARRLREAEHRI 308          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A4S4NKI2_9RHOB (Homocysteine S-methyltransferase family protein n=1 Tax=Aliishimia ponticola TaxID=2499833 RepID=A0A4S4NKI2_9RHOB)

HSP 1 Score: 352 bits (903), Expect = 2.760e-119
Identity = 181/264 (68.56%), Postives = 210/264 (79.55%), Query Frame = 1
Query:    4 VHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            VH DYADAGATVATTNTYA+HRDRLRGG SNHYAA+G  +P+M+DQ  AL   AL     VR+RC +AGSIGP+GASYRADL PD D A+ +YAEVA LLAPRVDLL+FET+ S+ A RA L AGRQT++PVWL FTVDD DG RLRSGE +AEAA IA EADA L NCSAPEA+PAAL AL+ +  PLGAYAN FT IT+AF+ G +TA +L AR D+    YA+HAM W+D GATI+GGCCE GPAHIAE+A RLRA GH +
Sbjct:   42 VHTDYADAGATVATTNTYALHRDRLRGGDSNHYAAEGTALPNMEDQLGALITTALDAVEPVRNRCRVAGSIGPIGASYRADLMPDHDEAVAIYAEVAKLLAPRVDLLLFETLPSIAAGRAALAAGRQTNRPVWLCFTVDDRDGHRLRSGEPVAEAATIAQEADAVLINCSAPEAIPAALEALATSNRPLGAYANGFTEITEAFIKGNTTAKALTARSDLSAQAYADHAMGWLDHGATILGGCCEVGPAHIAELANRLRAKGHSL 305          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A8J7WCL8_9RHOB (Homocysteine S-methyltransferase family protein n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J7WCL8_9RHOB)

HSP 1 Score: 304 bits (779), Expect = 1.370e-100
Identity = 172/270 (63.70%), Postives = 190/270 (70.37%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVR---DRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASE-ADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEIT 798
            +VH DY  AGATVATTNTYAIHRDRLR                ++D+F ALHHAALAEA A R   +   +AGSIGPL ASYR D+HP    A+PLYAEVA +LAP VDL I ET+ASL  ARA L   R T KPVWLA T+DDEDGTRLRSGE + EA  IA + A A LANCSAPEAMPAAL   +   +P GAYAN FT ITK FL    T  +LQ RRDMGP IYA H M W+  GATIVGGCCETGPAHIAEIARRLR AG+ IT
Sbjct:   41 QVHEDYFAAGATVATTNTYAIHRDRLRRAG-------------IEDRFEALHHAALAEAQAARGDRENLRIAGSIGPLAASYRPDIHPAHADAVPLYAEVAQILAPGVDLFICETVASLAHARAALEGARTTGKPVWLALTLDDEDGTRLRSGEPVDEALAIAQDGATAILANCSAPEAMPAALMRFARTTLPFGAYANGFTRITKEFLQDAPTVDALQPRRDMGPEIYASHVMAWVQMGATIVGGCCETGPAHIAEIARRLRVAGYTIT 297          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: UPI001ADFE933 (homocysteine S-methyltransferase family protein n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001ADFE933)

HSP 1 Score: 301 bits (771), Expect = 2.250e-99
Identity = 172/269 (63.94%), Postives = 192/269 (71.38%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRD-RCC--LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASEADAAL-ANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            +VH DY  AGATVA TNTYA+HRDRL                 M+DQF AL  AALAEA + RD   C  +AGSIGPLGASYR D+HP    A+PLYAEVAG+LAP  DLLI ET+ASL+ ARA L   R    PVWLA TVDDEDGTRLRSGE ++E   IA +  AAL ANC+APEAMPAAL  L+ AG+P GAYANAFTMITK FL    T  +L  RRDMGP IYA+H M W+D GATIVGGCCETGP HIAEIARRLR  GH+I
Sbjct:   41 QVHTDYFAAGATVAMTNTYALHRDRL-------------VKAGMEDQFPALLRAALAEAESARDAHGCGRIAGSIGPLGASYRPDIHPPHAEAVPLYAEVAGMLAPGCDLLICETVASLNHARAVLEGARGMGLPVWLAVTVDDEDGTRLRSGEPVSEVGPIARDGAAALLANCAAPEAMPAALAHLAKAGLPFGAYANAFTMITKDFLKDSPTVDALTRRRDMGPEIYADHVMRWLDCGATIVGGCCETGPLHIAEIARRLREVGHKI 296          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: A0A221K3Y9_9RHOB (Homocysteine S-methyltransferase n=1 Tax=Sulfitobacter pseudonitzschiae TaxID=1402135 RepID=A0A221K3Y9_9RHOB)

HSP 1 Score: 298 bits (762), Expect = 4.870e-98
Identity = 172/268 (64.18%), Postives = 187/268 (69.78%), Query Frame = 1
Query:    1 EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVRDRCC--LAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIAS-EADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            EVHRD+  AGAT+ATTNTYAIHRDRL G              DM DQFN L   AL EA   RD     LAG+IGPL ASYR DLHPD DTAIPLYAEVAGLLAP  DLLI ET+ASLD AR+ L    Q  KPVWLA TVDD DGT+LRSGE + +   IAS +A A L NCSAPEA+PAAL  LS   +P GAYAN F  IT+ FL    T A LQ R D+ PA YA+H M WIDAGATIVGGCCE GPAHIAEIARRL AAGH +
Sbjct:   41 EVHRDFTAAGATIATTNTYAIHRDRLVG-------------TDMDDQFNTLIDRALTEA---RDSNAPRLAGAIGPLVASYRPDLHPDPDTAIPLYAEVAGLLAPTCDLLICETVASLDHARSVLVGASQAGKPVWLALTVDDRDGTKLRSGEPVQDILPIASGKAAAILINCSAPEAIPAALAILSQGALPFGAYANGFQRITEEFLQTRPTVADLQVRHDLTPATYADHVMAWIDAGATIVGGCCEVGPAHIAEIARRLIAAGHTL 292          
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Match: UPI001C3808FA (homocysteine S-methyltransferase family protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C3808FA)

HSP 1 Score: 293 bits (750), Expect = 3.440e-96
Identity = 165/268 (61.57%), Postives = 190/268 (70.90%), Query Frame = 1
Query:    4 VHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNALHHAALAEAGAVR---DRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGLLAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSGEALAEAARIASE-ADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMITKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAHIAEIARRLRAAGHEI 795
            VH DY  AGAT+ATTNTYA+HRDRL        A  G     ++D++ AL  AAL EA A R       +AGS+GPLGASYR D+HPD  TA+PLY E+   LAPRVDL++FET+AS+D ARA + AG+   KPVW+A TVDDEDG  LRSGE +A+   + ++ ADA LANCSAPEAMP AL  L   G+P GAY NAFT ITK FL    T  +L ARRDMGP  YA HAMTWI  GATIVGGCCETGPAHIAEIA RLRAAGH I
Sbjct:   42 VHADYFAAGATIATTNTYALHRDRL--------APAG-----IEDEWPALVDAALDEAAAARVAHGAGRIAGSVGPLGASYRPDIHPDHATAVPLYRELVAALAPRVDLVLFETVASVDHARAAVAAGQGCGKPVWIAVTVDDEDGRHLRSGEPVADVVTVLADGADAVLANCSAPEAMPKALEILMKTGLPFGAYGNAFTQITKDFLKDRPTVDALSARRDMGPEAYAGHAMTWIGQGATIVGGCCETGPAHIAEIAARLRAAGHAI 296          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100544.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E3E8_9RHOB6.010e-17997.74Homocysteine S-methyltransferase n=2 Tax=Roseobact... [more]
A0A239G421_9RHOB3.280e-16087.97Homocysteine S-methyltransferase n=1 Tax=Antarctob... [more]
A0A0B3SXJ9_9RHOB3.670e-13677.36Homocysteine S-methyltransferase family protein n=... [more]
A0A0W7WQ63_9RHOB5.160e-12973.21Homocysteine methyltransferase n=1 Tax=Ponticoccus... [more]
A0A238J9I2_9RHOB9.250e-12169.78Homocysteine S-methyltransferase n=1 Tax=Pelagimon... [more]
A0A4S4NKI2_9RHOB2.760e-11968.56Homocysteine S-methyltransferase family protein n=... [more]
A0A8J7WCL8_9RHOB1.370e-10063.70Homocysteine S-methyltransferase family protein n=... [more]
UPI001ADFE9332.250e-9963.94homocysteine S-methyltransferase family protein n=... [more]
A0A221K3Y9_9RHOB4.870e-9864.18Homocysteine S-methyltransferase n=1 Tax=Sulfitoba... [more]
UPI001C3808FA3.440e-9661.57homocysteine S-methyltransferase family protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100544contigL-digitata_M_contig100544:1..801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380367.JIBC01000005_gene3012
Preferred namemmuM
PFAMsS-methyl_trans
Model size801
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC00035
KEGG koko:K00547
KEGG ReactionR00650
KEGG Pathwayko00270,ko01100,ko01110,map00270,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.14e-91
EggNOG OGsCOG2040@1|root,COG2040@2|Bacteria,1QU2A@1224|Proteobacteria,2TS3P@28211|Alphaproteobacteria,3ZWKS@60136|Sulfitobacter
EC2.1.1.10
DescriptionHomocysteine S-methyltransferase
Cds size801
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.1727288-CDS-L-digitata_M_contig100544:0..8011682406608.1727288-CDS-L-digitata_M_contig100544:0..801Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100544 1..801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100544.1.1prot_L-digitata_M_contig100544.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100544 1..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100544.1.1

>prot_L-digitata_M_contig100544.1.1 ID=prot_L-digitata_M_contig100544.1.1|Name=mRNA_L-digitata_M_contig100544.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=267bp
EVHRDYADAGATVATTNTYAIHRDRLRGGASNHYAADGATIPDMQDQFNA
LHHAALAEAGAVRDRCCLAGSIGPLGASYRADLHPDLDTAIPLYAEVAGL
LAPRVDLLIFETIASLDAARACLTAGRQTDKPVWLAFTVDDEDGTRLRSG
EALAEAARIASEADAALANCSAPEAMPAALGALSGAGVPLGAYANAFTMI
TKAFLDGGSTAASLQARRDMGPAIYAEHAMTWIDAGATIVGGCCETGPAH
IAEIARRLRAAGHEIT*
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mRNA from alignment at L-digitata_M_contig100544:1..801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100544.1.1 ID=mRNA_L-digitata_M_contig100544.1.1|Name=mRNA_L-digitata_M_contig100544.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig100544:1..801+ (Laminaria digitata LdigPH10_18mv male)
GAGGTGCACCGCGACTACGCCGATGCGGGCGCAACAGTGGCCACAACCAA CACCTATGCCATCCACCGCGACCGGCTGCGCGGCGGGGCCAGCAATCACT ACGCCGCCGATGGCGCGACAATCCCCGACATGCAGGACCAGTTCAACGCC CTGCACCACGCCGCGCTGGCCGAGGCAGGCGCCGTGCGCGACCGCTGCTG CCTCGCCGGGTCGATTGGTCCGCTGGGGGCCAGCTACCGCGCTGATCTGC ATCCCGATCTGGACACCGCGATCCCGCTTTATGCAGAGGTTGCAGGCCTC CTTGCCCCTCGCGTCGATCTGCTGATCTTCGAAACCATCGCCTCCCTCGA CGCGGCGCGCGCCTGCCTCACCGCCGGACGCCAGACAGACAAACCCGTCT GGCTGGCCTTCACCGTCGATGATGAGGACGGCACTCGCCTCCGCTCTGGT GAAGCGCTGGCAGAGGCGGCGCGCATCGCGTCAGAGGCGGACGCGGCTCT GGCCAACTGCTCAGCACCCGAGGCGATGCCCGCCGCGCTGGGCGCCCTCT CTGGCGCGGGCGTGCCGCTAGGCGCTTACGCCAATGCCTTCACCATGATC ACCAAGGCGTTTCTCGACGGCGGGTCCACGGCGGCCTCGCTTCAGGCGCG CCGTGACATGGGCCCCGCCATCTACGCCGAGCACGCCATGACATGGATCG ACGCAGGTGCCACCATCGTCGGCGGTTGCTGCGAAACCGGGCCCGCCCAT ATCGCTGAAATTGCCCGCCGCCTGCGCGCTGCCGGGCATGAAATCACCTG A
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Coding sequence (CDS) from alignment at L-digitata_M_contig100544:1..801+

>mRNA_L-digitata_M_contig100544.1.1 ID=mRNA_L-digitata_M_contig100544.1.1|Name=mRNA_L-digitata_M_contig100544.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig100544:1..801+ (Laminaria digitata LdigPH10_18mv male)
GAGGTGCACCGCGACTACGCCGATGCGGGCGCAACAGTGGCCACAACCAA
CACCTATGCCATCCACCGCGACCGGCTGCGCGGCGGGGCCAGCAATCACT
ACGCCGCCGATGGCGCGACAATCCCCGACATGCAGGACCAGTTCAACGCC
CTGCACCACGCCGCGCTGGCCGAGGCAGGCGCCGTGCGCGACCGCTGCTG
CCTCGCCGGGTCGATTGGTCCGCTGGGGGCCAGCTACCGCGCTGATCTGC
ATCCCGATCTGGACACCGCGATCCCGCTTTATGCAGAGGTTGCAGGCCTC
CTTGCCCCTCGCGTCGATCTGCTGATCTTCGAAACCATCGCCTCCCTCGA
CGCGGCGCGCGCCTGCCTCACCGCCGGACGCCAGACAGACAAACCCGTCT
GGCTGGCCTTCACCGTCGATGATGAGGACGGCACTCGCCTCCGCTCTGGT
GAAGCGCTGGCAGAGGCGGCGCGCATCGCGTCAGAGGCGGACGCGGCTCT
GGCCAACTGCTCAGCACCCGAGGCGATGCCCGCCGCGCTGGGCGCCCTCT
CTGGCGCGGGCGTGCCGCTAGGCGCTTACGCCAATGCCTTCACCATGATC
ACCAAGGCGTTTCTCGACGGCGGGTCCACGGCGGCCTCGCTTCAGGCGCG
CCGTGACATGGGCCCCGCCATCTACGCCGAGCACGCCATGACATGGATCG
ACGCAGGTGCCACCATCGTCGGCGGTTGCTGCGAAACCGGGCCCGCCCAT
ATCGCTGAAATTGCCCGCCGCCTGCGCGCTGCCGGGCATGAAATCACCTG
A
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