prot_L-digitata_M_contig100496.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig100496.1.1
Unique Name	prot_L-digitata_M_contig100496.1.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	117

Homology

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BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot
Match: UPI000D0E86E2 (EF-hand domain-containing protein n=1 Tax=Pannonibacter carbonis TaxID=2067569 RepID=UPI000D0E86E2)

HSP 1 Score: 51.6 bits (122), Expect = 3.280e-5
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0

Query:   32 RFGILDTDRDGAISRDEFRARKTVSGQSGF--SFEQLDADRTGRLTVSEFSAPVLWRFARLDRDGDGFLS 99
            RF   DTD+DG +S +EFRA +    +     +F++LD++  G++   EF       F+RLDRD DG L+
Sbjct:   68 RFAAADTDKDGKVSLEEFRAFRLAEAEPMRVRAFQRLDSNGDGKVAREEFDRISARMFSRLDRDNDGTLA 137

[Close]

BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot
Match: A0A519IXX6_9CAUL (EF-hand domain-containing protein n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519IXX6_9CAUL)

HSP 1 Score: 51.2 bits (121), Expect = 3.580e-5
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 0

Query:   39 DRDGAISRDEFRARKTVSGQSGFSFEQLDADRTGRLTVSEFSAPVLWRFARLDRDGDGFLSRTEAA 104
            DR G +   E + R  V   +G   E +DADR G ++  EF+AP+   FAR+D+DGDG LS+ E A
Sbjct:   73 DRTGPV---EIQTRILVMDGAGEDREGMDADRDGFVSRQEFAAPMDRAFARMDKDGDGKLSKDELA 135

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
UPI000D0E86E2	3.280e-5	38.57	EF-hand domain-containing protein n=1 Tax=Pannonib...	[more]
A0A519IXX6_9CAUL	3.580e-5	43.94	EF-hand domain-containing protein n=1 Tax=Brevundi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 33..50 e-value: 2.6E-5 score: 23.5 coord: 87..102 e-value: 0.0051 score: 16.3 coord: 63..81 e-value: 0.078 score: 12.5
None	No IPR available	GENE3D	1.10.238.10		coord: 28..113 e-value: 9.1E-12 score: 46.8
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 37..49
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 30..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100496	contig	L-digitata_M_contig100496:567..917 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100496.1.1	mRNA_L-digitata_M_contig100496.1.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig100496 567..917 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig100496.1.1 ID=prot_L-digitata_M_contig100496.1.1|Name=mRNA_L-digitata_M_contig100496.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=117bp
RPHPPIGSRPSIRTGTVGYRKTNFRHPXXXXRFGILDTDRDGAISRDEFR
ARKTVSGQSGFSFEQLDADRTGRLTVSEFSAPVLWRFARLDRDGDGFLSR
TEAARYLNLPASRSLPP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair