mRNA_L-digitata_M_contig100496.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100496.1.1
Unique NamemRNA_L-digitata_M_contig100496.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot
Match: UPI000D0E86E2 (EF-hand domain-containing protein n=1 Tax=Pannonibacter carbonis TaxID=2067569 RepID=UPI000D0E86E2)

HSP 1 Score: 51.6 bits (122), Expect = 3.280e-5
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   94 RFGILDTDRDGAISRDEFRARKTVSGQSGF--SFEQLDADRTGRLTVSEFSAPVLWRFARLDRDGDGFLS 297
            RF   DTD+DG +S +EFRA +    +     +F++LD++  G++   EF       F+RLDRD DG L+
Sbjct:   68 RFAAADTDKDGKVSLEEFRAFRLAEAEPMRVRAFQRLDSNGDGKVAREEFDRISARMFSRLDRDNDGTLA 137
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BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot
Match: A0A519IXX6_9CAUL (EF-hand domain-containing protein n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519IXX6_9CAUL)

HSP 1 Score: 51.2 bits (121), Expect = 3.580e-5
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  115 DRDGAISRDEFRARKTVSGQSGFSFEQLDADRTGRLTVSEFSAPVLWRFARLDRDGDGFLSRTEAA 312
            DR G +   E + R  V   +G   E +DADR G ++  EF+AP+   FAR+D+DGDG LS+ E A
Sbjct:   73 DRTGPV---EIQTRILVMDGAGEDREGMDADRDGFVSRQEFAAPMDRAFARMDKDGDGKLSKDELA 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100496.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000D0E86E23.280e-538.57EF-hand domain-containing protein n=1 Tax=Pannonib... [more]
A0A519IXX6_9CAUL3.580e-543.94EF-hand domain-containing protein n=1 Tax=Brevundi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100496contigL-digitata_M_contig100496:567..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1282362.AEAC466_02880
PFAMsEF-hand_5
Model size351
Max annot lvl204458|Caulobacterales
Exons1
Evalue1.23e-06
EggNOG OGsCOG5126@1|root,COG5126@2|Bacteria,1NH5D@1224|Proteobacteria,2UJHN@28211|Alphaproteobacteria,2KJKF@204458|Caulobacterales
DescriptionEF-hand domain pair
Cds size351
COG categoryDTZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.6957316-CDS-L-digitata_M_contig100496:566..9171682406607.6957316-CDS-L-digitata_M_contig100496:566..917Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100496 567..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100496.1.1prot_L-digitata_M_contig100496.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100496 567..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100496.1.1

>prot_L-digitata_M_contig100496.1.1 ID=prot_L-digitata_M_contig100496.1.1|Name=mRNA_L-digitata_M_contig100496.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=117bp
RPHPPIGSRPSIRTGTVGYRKTNFRHPXXXXRFGILDTDRDGAISRDEFR
ARKTVSGQSGFSFEQLDADRTGRLTVSEFSAPVLWRFARLDRDGDGFLSR
TEAARYLNLPASRSLPP
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mRNA from alignment at L-digitata_M_contig100496:567..917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100496.1.1 ID=mRNA_L-digitata_M_contig100496.1.1|Name=mRNA_L-digitata_M_contig100496.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=351bp|location=Sequence derived from alignment at L-digitata_M_contig100496:567..917+ (Laminaria digitata LdigPH10_18mv male)
CGGCCGCATCCGCCGATTGGTTCCAGGCCCTCGATACGAACCGGGACGGT
CGGGTATCGAAAAACGAACTTCAGGCATCCATANNNNNNNNNNCGGTTCG
GTATTCTGGATACCGACCGGGACGGCGCCATCAGCAGGGACGAGTTCCGC
GCGCGCAAAACGGTCTCCGGTCAATCCGGTTTTTCCTTCGAACAACTCGA
CGCCGACCGGACCGGCAGGCTCACCGTTTCGGAATTTTCCGCGCCGGTGC
TTTGGCGTTTTGCCCGGCTGGACCGTGATGGCGACGGTTTCCTGTCACGA
ACCGAAGCGGCCCGCTACCTCAACCTGCCGGCATCGCGGTCTCTTCCGCC
G
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Coding sequence (CDS) from alignment at L-digitata_M_contig100496:567..917+

>mRNA_L-digitata_M_contig100496.1.1 ID=mRNA_L-digitata_M_contig100496.1.1|Name=mRNA_L-digitata_M_contig100496.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=351bp|location=Sequence derived from alignment at L-digitata_M_contig100496:567..917+ (Laminaria digitata LdigPH10_18mv male)
CGGCCGCATCCGCCGATTGGTTCCAGGCCCTCGATACGAACCGGGACGGT
CGGGTATCGAAAAACGAACTTCAGGCATCCATANNNNNNNNNNCGGTTCG
GTATTCTGGATACCGACCGGGACGGCGCCATCAGCAGGGACGAGTTCCGC
GCGCGCAAAACGGTCTCCGGTCAATCCGGTTTTTCCTTCGAACAACTCGA
CGCCGACCGGACCGGCAGGCTCACCGTTTCGGAATTTTCCGCGCCGGTGC
TTTGGCGTTTTGCCCGGCTGGACCGTGATGGCGACGGTTTCCTGTCACGA
ACCGAAGCGGCCCGCTACCTCAACCTGCCGGCATCGCGGTCTCTTCCGCC
G
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