mRNA_L-digitata_M_contig100361.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100361.1.1
Unique NamemRNA_L-digitata_M_contig100361.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2D7FKX4_9PROT (GTPase Obg n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FKX4_9PROT)

HSP 1 Score: 457 bits (1176), Expect = 3.770e-160
Identity = 233/268 (86.94%), Postives = 247/268 (92.16%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
            ASGDS+T+KVPVGTQIFDDDNLV+LADFTRVGQ VVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERW+RLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTL PVLGVVYVDQ EFV+ADIPGLI GAH+GAGLGHRFLGHVERCGALLHL+DCTEDDIVGAWKTIR ELEAY  ILATKPEILALNK+DAIPEEFI EKKAEL+AASG +VIAISGATG G++ ALR L  TI+QNRAD+ AA   HI   SWTP
Sbjct:   81 ASGDSITIKVPVGTQIFDDDNLVLLADFTRVGQCVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWIRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLTPVLGVVYVDQTEFVVADIPGLIGGAHDGAGLGHRFLGHVERCGALLHLIDCTEDDIVGAWKTIRRELEAYDNILATKPEILALNKVDAIPEEFITEKKAELKAASGIDVIAISGATGVGVEGALRTLRHTIEQNRADQPAAKTAHI-TQSWTP 347          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2D8PRF7_9PROT (GTPase Obg n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRF7_9PROT)

HSP 1 Score: 399 bits (1024), Expect = 4.980e-137
Identity = 205/268 (76.49%), Postives = 229/268 (85.45%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
            A+GD+V ++VPVGTQIFDD + ++LADFTRVGQR+VLL+GG+GGRGN RFKSS NQAPRR  TG EGEERW+ LRLKLIADAGL+GLPNAGKSTFLSAVSRAKPKVADYPFTTL PVLGVV VD AEFVIADIPGLI GAHEGAGLG RFLGHVERCGALLHL+DCTEDDI+GAWKTIRGE+EAYGG L  K EILALNKIDAIPEEFI EK+ ELE ASG++V+AISGA G G++ ALR +   +  NRA+E  AA      P WTP
Sbjct:   81 AAGDTVILQVPVGTQIFDDQHDLLLADFTRVGQRIVLLEGGKGGRGNARFKSSTNQAPRRADTGIEGEERWIWLRLKLIADAGLIGLPNAGKSTFLSAVSRAKPKVADYPFTTLNPVLGVVSVDTAEFVIADIPGLIGGAHEGAGLGDRFLGHVERCGALLHLIDCTEDDIIGAWKTIRGEIEAYGGGLNHKSEILALNKIDAIPEEFIDEKRTELEQASGQKVLAISGAAGTGLETALREIRSLVDHNRAEEAEAASAEASVP-WTP 347          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A520NZ34_9PROT (GTPase Obg n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NZ34_9PROT)

HSP 1 Score: 389 bits (999), Expect = 3.140e-133
Identity = 200/270 (74.07%), Postives = 230/270 (85.19%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKA--AAEVHIPAPSWTP 804
            A+G+ +T++VPVGTQIFDD++ ++LADFTRV  R+VLL+GG+GGRGNTRFKSS NQAPRR  TG EGEERW+RLRLKLIADAGLVGLPNAGKSTFLSAVSRA+PK+ADYPFTTL PVLGVV++DQ EFVIADIPGLIEGAH GAGLG RFLGHVERCGALLHL+DCTEDDIVGAW TIR E+EAYGG LA K EILALNKIDAIPEEFI EK AELE ASG+ V+A+SGA G G+++ LR L   I+++R    A  AAE  +    W+P
Sbjct:   81 AAGNDITLQVPVGTQIFDDEHDILLADFTRVRHRIVLLQGGQGGRGNTRFKSSTNQAPRRADTGGEGEERWIRLRLKLIADAGLVGLPNAGKSTFLSAVSRARPKIADYPFTTLTPVLGVVHIDQTEFVIADIPGLIEGAHAGAGLGDRFLGHVERCGALLHLIDCTEDDIVGAWHTIRSEIEAYGGGLAKKKEILALNKIDAIPEEFITEKCAELETASGQHVMAVSGAAGTGVNDLLRRLRSMIEEDREATNADPAAESAL---RWSP 347          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2S6QE75_9PROT (GTPase Obg n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QE75_9PROT)

HSP 1 Score: 386 bits (992), Expect = 3.640e-132
Identity = 198/268 (73.88%), Postives = 227/268 (84.70%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
            ASG+ V +KVPVGTQIFDD++ ++LADFT VGQRV+LL+GG+GGRGNTRFKSS NQAPRR  TG EG+ERWVRLRLKLIADAGLVGLPNAGKSTFLSA+SRAKPK+ADYPFTTL+PVLGVV+ DQ EFVIADIPGLIEGAH+G+GLG +FLGHVERCGALLHL+DCTEDDIVG W+TIR E+EAYGG L  K EILALNKIDAIPEEF+ EK+A+LE  SG+EV+AISGA G G++E L  L   I+ +RA       V    P WTP
Sbjct:   81 ASGEDVILKVPVGTQIFDDEHNLLLADFTAVGQRVLLLEGGQGGRGNTRFKSSTNQAPRRADTGGEGKERWVRLRLKLIADAGLVGLPNAGKSTFLSAISRAKPKIADYPFTTLMPVLGVVHSDQTEFVIADIPGLIEGAHKGSGLGDQFLGHVERCGALLHLIDCTEDDIVGGWRTIRAEIEAYGGGLEKKREILALNKIDAIPEEFVYEKRADLEEVSGQEVLAISGAAGTGVEEILGRLLSIIEDDRAAGNEDRTVESATP-WTP 347          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2D8G7G6_9PROT (GTPase Obg n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G7G6_9PROT)

HSP 1 Score: 379 bits (972), Expect = 3.980e-129
Identity = 192/250 (76.80%), Postives = 216/250 (86.40%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNR 750
            A+G+ +T++VP+GTQIFDD++  +LAD TRVGQRV+LL+GG+GGRGNTRFKSS NQAPRR  TG EGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTL P LGVVY+DQ EFVIA IPGLIEGAH GAGLG RFLGHVERCGALLHL+DCTEDDIVGAW T+RGEL AY G L  K EILALNKIDAIPEEFI EK++ELE A+G EV   SG +GAGI++ LR +  T++  R
Sbjct:   81 AAGEDITLQVPIGTQIFDDEHDFLLADLTRVGQRVILLQGGQGGRGNTRFKSSTNQAPRRADTGGEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLTPALGVVYIDQTEFVIAXIPGLIEGAHXGAGLGDRFLGHVERCGALLHLIDCTEDDIVGAWLTVRGELAAYEGSLEEKREILALNKIDAIPEEFINEKRSELEIATGAEVHVTSGLSGAGIEDVLRKMKITVEAER 330          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A3D2BV56_9PROT (GTPase ObgE (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BV56_9PROT)

HSP 1 Score: 338 bits (867), Expect = 5.350e-115
Identity = 177/228 (77.63%), Postives = 194/228 (85.09%), Query Frame = 1
Query:  127 GGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKA--AAEVHIPAPSWTP 804
            GGRGNTRFKSS NQAPRR  TG EGEERW+RLRLKLIADAGLVGLPNAGKSTFLSAVSRA+PK+ADYPFTTL PVLGVV++DQ EFVIADIPGLIEGAH GAGLG RFLGHVERCGALLHL+DCTEDDIVGAW TIR E+EAYGG LA K EILALNKIDAIPEEFIAEK A+LE ASG+ V A+SGA GAG+D+ LR L   I+++R    A  AAE  +   SW+P
Sbjct:    1 GGRGNTRFKSSTNQAPRRADTGGEGEERWIRLRLKLIADAGLVGLPNAGKSTFLSAVSRARPKIADYPFTTLTPVLGVVHIDQTEFVIADIPGLIEGAHAGAGLGDRFLGHVERCGALLHLIDCTEDDIVGAWHTIRSEIEAYGGGLAKKKEILALNKIDAIPEEFIAEKCADLETASGQHVTAVSGAAGAGVDDVLRRLRSMIEEDREATNADPAAESAL---SWSP 225          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: UPI001E284989 (GTPase ObgE n=1 Tax=Pelagibacterium sp. HS1C4-1 TaxID=2901140 RepID=UPI001E284989)

HSP 1 Score: 333 bits (853), Expect = 4.630e-111
Identity = 180/268 (67.16%), Postives = 203/268 (75.75%), Query Frame = 1
Query:    7 GDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQN--RADEKAAAEVHIPAPSWTP 804
            G  V +KVPVGTQI ++DN  ++ADFT VGQR VLLKGG GG GN  FKSS NQAPRR   G+EG E+W+ LRLKLIADAGLVGLPNAGKSTFLSAV+ AKPK+ADYPFTTL P LGVV +   EFV+ADIPGLIEGA EGAGLG RFLGHVERCGAL+HLVD T +DIVGA++T+R ELEAYG  L TK EILALNKIDA+P E +AEKKA LE ASG  V+ ISGATG  +D  L  +   +  N   A   A AE   PA  W P
Sbjct:   83 GKDVILKVPVGTQILEEDNETLIADFTEVGQRAVLLKGGNGGFGNAHFKSSTNQAPRRANPGQEGVEKWIWLRLKLIADAGLVGLPNAGKSTFLSAVTAAKPKIADYPFTTLHPGLGVVRIGAREFVLADIPGLIEGASEGAGLGDRFLGHVERCGALIHLVDATAEDIVGAYRTVRHELEAYGHDLETKEEILALNKIDAVPPEELAEKKAALEKASGSAVLTISGATGQNVDAVLFGVLEILDHNADNATRDAKAE---PAEKWEP 347          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A433X7F6_9HYPH (GTPase Obg n=1 Tax=Arsenicitalea aurantiaca TaxID=1783274 RepID=A0A433X7F6_9HYPH)

HSP 1 Score: 328 bits (840), Expect = 4.340e-109
Identity = 168/268 (62.69%), Postives = 202/268 (75.37%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
            A G    ++VPVGTQIF+DDN  ++AD T VGQ VVL  GG GG GN  FK+S NQAPRR   G  G E+W+ LRLKLIADAGLVGLPNAGKSTFL+AVS AKPK+ADYPFTTL P LGVV +D+ EFV+ADIPGLIEGAHEGAG+G RFLGHVERCG L+HLVD T +D+ GA++TIR ELEAY G LA KPE+L LNK+DA+ +E +AE++A LE ASG +V  +SG +G G+D  LR +   + + RA E+A A      P W P
Sbjct:   81 ADGADTVLRVPVGTQIFEDDNETLIADLTEVGQTVVLASGGNGGFGNAHFKTSSNQAPRRANPGLPGTEKWIWLRLKLIADAGLVGLPNAGKSTFLAAVSAAKPKIADYPFTTLHPNLGVVRIDEREFVLADIPGLIEGAHEGAGIGDRFLGHVERCGVLIHLVDGTAEDVAGAYRTIRTELEAYDGGLAEKPELLVLNKVDALDDEALAERRAALEEASGGDVFVVSGVSGRGVDSVLRAVMAILDEERA-ERAEAGRKGAEPDWVP 347          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A7W2GJY9_9PROT (GTPase Obg n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7W2GJY9_9PROT)

HSP 1 Score: 326 bits (835), Expect = 3.030e-108
Identity = 169/256 (66.02%), Postives = 200/256 (78.12%), Query Frame = 1
Query:    7 GDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAE 774
            G+S+T+KVPVGTQI  +D   +L D T +G+R VLLKGG+GGRGN RFKSS NQAPRR  TG  GEE W+ LRLKL+ADAGLVGLPNAGKSTF+SA +RA+PK+ADYPFTTLVP LGVVY+D+ EFV+ADIPGLIEGAH G GLGH+FLGHVERC  LLHLVD T++D+VGA++TIR EL  Y   LA KPEILALNK DA+  E I EK+  LEAASG +V  +SG T  G+ E LR L + I   +A  +AA E
Sbjct:   82 GNSITLKVPVGTQIIHEDRQTVLLDLTTIGERHVLLKGGQGGRGNVRFKSSTNQAPRRADTGMPGEEMWIWLRLKLVADAGLVGLPNAGKSTFISACTRARPKIADYPFTTLVPKLGVVYLDEQEFVLADIPGLIEGAHMGVGLGHKFLGHVERCRVLLHLVDGTQEDVVGAYETIREELTLYADHLAKKPEILALNKCDALLPEEIEEKRQALEAASGAKVFVLSGVTKLGLTEVLRALWQNILPYKAVPEAAEE 337          
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2E7FSR8_9HYPH (GTPase Obg n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E7FSR8_9HYPH)

HSP 1 Score: 324 bits (831), Expect = 1.000e-107
Identity = 171/268 (63.81%), Postives = 201/268 (75.00%), Query Frame = 1
Query:    1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
            A G  + +KVPVGTQIF++D   ++ADFT VGQR  LL+GG GG GN  FK+S NQAPRR   G  GEERW+ LRLKLIADAGLVGLPNAGKSTFLSAV+ AKPK+ADYPFTTL P LGVV     EFV+ADIPGLIEGA EGAGLG RFLGHVERCG L+HLVD T+DD+VGA++TIR ELEAYGG L  K +IL LNKIDA+ EE +AE++A LE ASG +V+AISGATG  ++  L  +   +  N A+  A +    P   W P
Sbjct:   81 ADGADIVLKVPVGTQIFEEDGETLIADFTEVGQRQTLLEGGNGGFGNAHFKTSTNQAPRRANPGLPGEERWIWLRLKLIADAGLVGLPNAGKSTFLSAVTAAKPKIADYPFTTLHPGLGVVRAGAREFVLADIPGLIEGASEGAGLGDRFLGHVERCGVLIHLVDGTQDDVVGAYETIRSELEAYGGGLVGKEQILCLNKIDALDEETLAERRAALEKASGGDVLAISGATGKNVETVLYAVLDVLDHN-AENDARSSRTEPGDKWVP 347          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FKX4_9PROT3.770e-16086.94GTPase Obg n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A2D8PRF7_9PROT4.980e-13776.49GTPase Obg n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A520NZ34_9PROT3.140e-13374.07GTPase Obg n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A2S6QE75_9PROT3.640e-13273.88GTPase Obg n=1 Tax=Alphaproteobacteria bacterium M... [more]
A0A2D8G7G6_9PROT3.980e-12976.80GTPase Obg n=1 Tax=Alphaproteobacteria bacterium T... [more]
A0A3D2BV56_9PROT5.350e-11577.63GTPase ObgE (Fragment) n=1 Tax=Rhodospirillaceae b... [more]
UPI001E2849894.630e-11167.16GTPase ObgE n=1 Tax=Pelagibacterium sp. HS1C4-1 Ta... [more]
A0A433X7F6_9HYPH4.340e-10962.69GTPase Obg n=1 Tax=Arsenicitalea aurantiaca TaxID=... [more]
A0A7W2GJY9_9PROT3.030e-10866.02GTPase Obg n=1 Tax=Alphaproteobacteria bacterium T... [more]
A0A2E7FSR8_9HYPH1.000e-10763.81GTPase Obg n=3 Tax=Hyphomicrobiales TaxID=356 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100361contigL-digitata_M_contig100361:3..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog570967.JMLV01000014_gene2033
Preferred nameobg
PFAMsGTP1_OBG,MMR_HSR1
Model size807
Max annot lvl204441|Rhodospirillales
KEGG koko:K03979
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.21e-107
EggNOG OGsCOG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,2TR5I@28211|Alphaproteobacteria,2JQWN@204441|Rhodospirillales
DescriptionAn essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Cds size786
COG categoryS
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.447104-UTR-L-digitata_M_contig100361:2..231682406606.447104-UTR-L-digitata_M_contig100361:2..23Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100361 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.4554553-CDS-L-digitata_M_contig100361:23..8091682406606.4554553-CDS-L-digitata_M_contig100361:23..809Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100361 24..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100361.1.1prot_L-digitata_M_contig100361.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100361 24..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100361.1.1

>prot_L-digitata_M_contig100361.1.1 ID=prot_L-digitata_M_contig100361.1.1|Name=mRNA_L-digitata_M_contig100361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=262bp
MKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQA
PRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVA
DYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERC
GALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEE
FIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAA
EVHIPAPSWTP*
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mRNA from alignment at L-digitata_M_contig100361:3..809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100361.1.1 ID=mRNA_L-digitata_M_contig100361.1.1|Name=mRNA_L-digitata_M_contig100361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=807bp|location=Sequence derived from alignment at L-digitata_M_contig100361:3..809+ (Laminaria digitata LdigPH10_18mv male)
GCCAGCGGCGACAGTGTCACCATGAAAGTACCGGTCGGCACCCAAATTTT CGACGACGACAATCTGGTCATGCTTGCGGATTTCACACGTGTGGGCCAAC GCGTCGTCCTGCTCAAAGGCGGGCGCGGCGGGCGCGGCAACACACGTTTC AAATCTTCGCGTAACCAGGCCCCCCGGCGCTTCGGCACCGGCGAGGAAGG CGAGGAACGCTGGGTTCGCCTGCGGCTAAAACTGATCGCCGATGCCGGGC TGGTTGGCCTGCCGAATGCCGGGAAATCGACCTTCCTGTCCGCGGTATCC CGGGCGAAACCGAAGGTCGCGGATTATCCGTTTACGACGCTGGTGCCGGT GCTTGGCGTAGTTTATGTGGATCAGGCCGAATTCGTTATCGCCGATATTC CCGGTCTGATCGAGGGTGCCCATGAAGGTGCGGGGCTCGGGCACCGCTTT CTCGGCCACGTGGAACGATGCGGCGCCCTGCTGCACTTGGTCGATTGCAC CGAAGACGATATTGTCGGTGCCTGGAAAACGATCCGCGGCGAACTCGAAG CCTATGGCGGCATCCTGGCGACGAAGCCTGAAATCCTTGCCCTGAACAAG ATCGACGCTATTCCCGAAGAGTTTATCGCAGAGAAAAAGGCTGAGCTTGA AGCGGCATCGGGGCGTGAGGTCATCGCGATCTCGGGCGCGACGGGCGCGG GTATTGACGAGGCGCTGCGCATTCTGCACCGCACCATCAAACAGAACCGG GCGGATGAAAAGGCTGCTGCCGAAGTCCACATCCCGGCGCCGTCATGGAC ACCGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100361:3..809+

>mRNA_L-digitata_M_contig100361.1.1 ID=mRNA_L-digitata_M_contig100361.1.1|Name=mRNA_L-digitata_M_contig100361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=786bp|location=Sequence derived from alignment at L-digitata_M_contig100361:3..809+ (Laminaria digitata LdigPH10_18mv male)
ATGAAAGTACCGGTCGGCACCCAAATTTTCGACGACGACAATCTGGTCAT
GCTTGCGGATTTCACACGTGTGGGCCAACGCGTCGTCCTGCTCAAAGGCG
GGCGCGGCGGGCGCGGCAACACACGTTTCAAATCTTCGCGTAACCAGGCC
CCCCGGCGCTTCGGCACCGGCGAGGAAGGCGAGGAACGCTGGGTTCGCCT
GCGGCTAAAACTGATCGCCGATGCCGGGCTGGTTGGCCTGCCGAATGCCG
GGAAATCGACCTTCCTGTCCGCGGTATCCCGGGCGAAACCGAAGGTCGCG
GATTATCCGTTTACGACGCTGGTGCCGGTGCTTGGCGTAGTTTATGTGGA
TCAGGCCGAATTCGTTATCGCCGATATTCCCGGTCTGATCGAGGGTGCCC
ATGAAGGTGCGGGGCTCGGGCACCGCTTTCTCGGCCACGTGGAACGATGC
GGCGCCCTGCTGCACTTGGTCGATTGCACCGAAGACGATATTGTCGGTGC
CTGGAAAACGATCCGCGGCGAACTCGAAGCCTATGGCGGCATCCTGGCGA
CGAAGCCTGAAATCCTTGCCCTGAACAAGATCGACGCTATTCCCGAAGAG
TTTATCGCAGAGAAAAAGGCTGAGCTTGAAGCGGCATCGGGGCGTGAGGT
CATCGCGATCTCGGGCGCGACGGGCGCGGGTATTGACGAGGCGCTGCGCA
TTCTGCACCGCACCATCAAACAGAACCGGGCGGATGAAAAGGCTGCTGCC
GAAGTCCACATCCCGGCGCCGTCATGGACACCGTAA
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