mRNA_L-digitata_M_contig100361.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2D7FKX4_9PROT (GTPase Obg n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FKX4_9PROT) HSP 1 Score: 457 bits (1176), Expect = 3.770e-160 Identity = 233/268 (86.94%), Postives = 247/268 (92.16%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
ASGDS+T+KVPVGTQIFDDDNLV+LADFTRVGQ VVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERW+RLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTL PVLGVVYVDQ EFV+ADIPGLI GAH+GAGLGHRFLGHVERCGALLHL+DCTEDDIVGAWKTIR ELEAY ILATKPEILALNK+DAIPEEFI EKKAEL+AASG +VIAISGATG G++ ALR L TI+QNRAD+ AA HI SWTP
Sbjct: 81 ASGDSITIKVPVGTQIFDDDNLVLLADFTRVGQCVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWIRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLTPVLGVVYVDQTEFVVADIPGLIGGAHDGAGLGHRFLGHVERCGALLHLIDCTEDDIVGAWKTIRRELEAYDNILATKPEILALNKVDAIPEEFITEKKAELKAASGIDVIAISGATGVGVEGALRTLRHTIEQNRADQPAAKTAHI-TQSWTP 347
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2D8PRF7_9PROT (GTPase Obg n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRF7_9PROT) HSP 1 Score: 399 bits (1024), Expect = 4.980e-137 Identity = 205/268 (76.49%), Postives = 229/268 (85.45%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
A+GD+V ++VPVGTQIFDD + ++LADFTRVGQR+VLL+GG+GGRGN RFKSS NQAPRR TG EGEERW+ LRLKLIADAGL+GLPNAGKSTFLSAVSRAKPKVADYPFTTL PVLGVV VD AEFVIADIPGLI GAHEGAGLG RFLGHVERCGALLHL+DCTEDDI+GAWKTIRGE+EAYGG L K EILALNKIDAIPEEFI EK+ ELE ASG++V+AISGA G G++ ALR + + NRA+E AA P WTP
Sbjct: 81 AAGDTVILQVPVGTQIFDDQHDLLLADFTRVGQRIVLLEGGKGGRGNARFKSSTNQAPRRADTGIEGEERWIWLRLKLIADAGLIGLPNAGKSTFLSAVSRAKPKVADYPFTTLNPVLGVVSVDTAEFVIADIPGLIGGAHEGAGLGDRFLGHVERCGALLHLIDCTEDDIIGAWKTIRGEIEAYGGGLNHKSEILALNKIDAIPEEFIDEKRTELEQASGQKVLAISGAAGTGLETALREIRSLVDHNRAEEAEAASAEASVP-WTP 347
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A520NZ34_9PROT (GTPase Obg n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NZ34_9PROT) HSP 1 Score: 389 bits (999), Expect = 3.140e-133 Identity = 200/270 (74.07%), Postives = 230/270 (85.19%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKA--AAEVHIPAPSWTP 804
A+G+ +T++VPVGTQIFDD++ ++LADFTRV R+VLL+GG+GGRGNTRFKSS NQAPRR TG EGEERW+RLRLKLIADAGLVGLPNAGKSTFLSAVSRA+PK+ADYPFTTL PVLGVV++DQ EFVIADIPGLIEGAH GAGLG RFLGHVERCGALLHL+DCTEDDIVGAW TIR E+EAYGG LA K EILALNKIDAIPEEFI EK AELE ASG+ V+A+SGA G G+++ LR L I+++R A AAE + W+P
Sbjct: 81 AAGNDITLQVPVGTQIFDDEHDILLADFTRVRHRIVLLQGGQGGRGNTRFKSSTNQAPRRADTGGEGEERWIRLRLKLIADAGLVGLPNAGKSTFLSAVSRARPKIADYPFTTLTPVLGVVHIDQTEFVIADIPGLIEGAHAGAGLGDRFLGHVERCGALLHLIDCTEDDIVGAWHTIRSEIEAYGGGLAKKKEILALNKIDAIPEEFITEKCAELETASGQHVMAVSGAAGTGVNDLLRRLRSMIEEDREATNADPAAESAL---RWSP 347
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2S6QE75_9PROT (GTPase Obg n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QE75_9PROT) HSP 1 Score: 386 bits (992), Expect = 3.640e-132 Identity = 198/268 (73.88%), Postives = 227/268 (84.70%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
ASG+ V +KVPVGTQIFDD++ ++LADFT VGQRV+LL+GG+GGRGNTRFKSS NQAPRR TG EG+ERWVRLRLKLIADAGLVGLPNAGKSTFLSA+SRAKPK+ADYPFTTL+PVLGVV+ DQ EFVIADIPGLIEGAH+G+GLG +FLGHVERCGALLHL+DCTEDDIVG W+TIR E+EAYGG L K EILALNKIDAIPEEF+ EK+A+LE SG+EV+AISGA G G++E L L I+ +RA V P WTP
Sbjct: 81 ASGEDVILKVPVGTQIFDDEHNLLLADFTAVGQRVLLLEGGQGGRGNTRFKSSTNQAPRRADTGGEGKERWVRLRLKLIADAGLVGLPNAGKSTFLSAISRAKPKIADYPFTTLMPVLGVVHSDQTEFVIADIPGLIEGAHKGSGLGDQFLGHVERCGALLHLIDCTEDDIVGGWRTIRAEIEAYGGGLEKKREILALNKIDAIPEEFVYEKRADLEEVSGQEVLAISGAAGTGVEEILGRLLSIIEDDRAAGNEDRTVESATP-WTP 347
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2D8G7G6_9PROT (GTPase Obg n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G7G6_9PROT) HSP 1 Score: 379 bits (972), Expect = 3.980e-129 Identity = 192/250 (76.80%), Postives = 216/250 (86.40%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNR 750
A+G+ +T++VP+GTQIFDD++ +LAD TRVGQRV+LL+GG+GGRGNTRFKSS NQAPRR TG EGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTL P LGVVY+DQ EFVIA IPGLIEGAH GAGLG RFLGHVERCGALLHL+DCTEDDIVGAW T+RGEL AY G L K EILALNKIDAIPEEFI EK++ELE A+G EV SG +GAGI++ LR + T++ R
Sbjct: 81 AAGEDITLQVPIGTQIFDDEHDFLLADLTRVGQRVILLQGGQGGRGNTRFKSSTNQAPRRADTGGEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLTPALGVVYIDQTEFVIAXIPGLIEGAHXGAGLGDRFLGHVERCGALLHLIDCTEDDIVGAWLTVRGELAAYEGSLEEKREILALNKIDAIPEEFINEKRSELEIATGAEVHVTSGLSGAGIEDVLRKMKITVEAER 330
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A3D2BV56_9PROT (GTPase ObgE (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BV56_9PROT) HSP 1 Score: 338 bits (867), Expect = 5.350e-115 Identity = 177/228 (77.63%), Postives = 194/228 (85.09%), Query Frame = 1
Query: 127 GGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKA--AAEVHIPAPSWTP 804
GGRGNTRFKSS NQAPRR TG EGEERW+RLRLKLIADAGLVGLPNAGKSTFLSAVSRA+PK+ADYPFTTL PVLGVV++DQ EFVIADIPGLIEGAH GAGLG RFLGHVERCGALLHL+DCTEDDIVGAW TIR E+EAYGG LA K EILALNKIDAIPEEFIAEK A+LE ASG+ V A+SGA GAG+D+ LR L I+++R A AAE + SW+P
Sbjct: 1 GGRGNTRFKSSTNQAPRRADTGGEGEERWIRLRLKLIADAGLVGLPNAGKSTFLSAVSRARPKIADYPFTTLTPVLGVVHIDQTEFVIADIPGLIEGAHAGAGLGDRFLGHVERCGALLHLIDCTEDDIVGAWHTIRSEIEAYGGGLAKKKEILALNKIDAIPEEFIAEKCADLETASGQHVTAVSGAAGAGVDDVLRRLRSMIEEDREATNADPAAESAL---SWSP 225
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: UPI001E284989 (GTPase ObgE n=1 Tax=Pelagibacterium sp. HS1C4-1 TaxID=2901140 RepID=UPI001E284989) HSP 1 Score: 333 bits (853), Expect = 4.630e-111 Identity = 180/268 (67.16%), Postives = 203/268 (75.75%), Query Frame = 1
Query: 7 GDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQN--RADEKAAAEVHIPAPSWTP 804
G V +KVPVGTQI ++DN ++ADFT VGQR VLLKGG GG GN FKSS NQAPRR G+EG E+W+ LRLKLIADAGLVGLPNAGKSTFLSAV+ AKPK+ADYPFTTL P LGVV + EFV+ADIPGLIEGA EGAGLG RFLGHVERCGAL+HLVD T +DIVGA++T+R ELEAYG L TK EILALNKIDA+P E +AEKKA LE ASG V+ ISGATG +D L + + N A A AE PA W P
Sbjct: 83 GKDVILKVPVGTQILEEDNETLIADFTEVGQRAVLLKGGNGGFGNAHFKSSTNQAPRRANPGQEGVEKWIWLRLKLIADAGLVGLPNAGKSTFLSAVTAAKPKIADYPFTTLHPGLGVVRIGAREFVLADIPGLIEGASEGAGLGDRFLGHVERCGALIHLVDATAEDIVGAYRTVRHELEAYGHDLETKEEILALNKIDAVPPEELAEKKAALEKASGSAVLTISGATGQNVDAVLFGVLEILDHNADNATRDAKAE---PAEKWEP 347
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A433X7F6_9HYPH (GTPase Obg n=1 Tax=Arsenicitalea aurantiaca TaxID=1783274 RepID=A0A433X7F6_9HYPH) HSP 1 Score: 328 bits (840), Expect = 4.340e-109 Identity = 168/268 (62.69%), Postives = 202/268 (75.37%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
A G ++VPVGTQIF+DDN ++AD T VGQ VVL GG GG GN FK+S NQAPRR G G E+W+ LRLKLIADAGLVGLPNAGKSTFL+AVS AKPK+ADYPFTTL P LGVV +D+ EFV+ADIPGLIEGAHEGAG+G RFLGHVERCG L+HLVD T +D+ GA++TIR ELEAY G LA KPE+L LNK+DA+ +E +AE++A LE ASG +V +SG +G G+D LR + + + RA E+A A P W P
Sbjct: 81 ADGADTVLRVPVGTQIFEDDNETLIADLTEVGQTVVLASGGNGGFGNAHFKTSSNQAPRRANPGLPGTEKWIWLRLKLIADAGLVGLPNAGKSTFLAAVSAAKPKIADYPFTTLHPNLGVVRIDEREFVLADIPGLIEGAHEGAGIGDRFLGHVERCGVLIHLVDGTAEDVAGAYRTIRTELEAYDGGLAEKPELLVLNKVDALDDEALAERRAALEEASGGDVFVVSGVSGRGVDSVLRAVMAILDEERA-ERAEAGRKGAEPDWVP 347
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A7W2GJY9_9PROT (GTPase Obg n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7W2GJY9_9PROT) HSP 1 Score: 326 bits (835), Expect = 3.030e-108 Identity = 169/256 (66.02%), Postives = 200/256 (78.12%), Query Frame = 1
Query: 7 GDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAE 774
G+S+T+KVPVGTQI +D +L D T +G+R VLLKGG+GGRGN RFKSS NQAPRR TG GEE W+ LRLKL+ADAGLVGLPNAGKSTF+SA +RA+PK+ADYPFTTLVP LGVVY+D+ EFV+ADIPGLIEGAH G GLGH+FLGHVERC LLHLVD T++D+VGA++TIR EL Y LA KPEILALNK DA+ E I EK+ LEAASG +V +SG T G+ E LR L + I +A +AA E
Sbjct: 82 GNSITLKVPVGTQIIHEDRQTVLLDLTTIGERHVLLKGGQGGRGNVRFKSSTNQAPRRADTGMPGEEMWIWLRLKLVADAGLVGLPNAGKSTFISACTRARPKIADYPFTTLVPKLGVVYLDEQEFVLADIPGLIEGAHMGVGLGHKFLGHVERCRVLLHLVDGTQEDVVGAYETIREELTLYADHLAKKPEILALNKCDALLPEEIEEKRQALEAASGAKVFVLSGVTKLGLTEVLRALWQNILPYKAVPEAAEE 337
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Match: A0A2E7FSR8_9HYPH (GTPase Obg n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E7FSR8_9HYPH) HSP 1 Score: 324 bits (831), Expect = 1.000e-107 Identity = 171/268 (63.81%), Postives = 201/268 (75.00%), Query Frame = 1
Query: 1 ASGDSVTMKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAPRRFGTGEEGEERWVRLRLKLIADAGLVGLPNAGKSTFLSAVSRAKPKVADYPFTTLVPVLGVVYVDQAEFVIADIPGLIEGAHEGAGLGHRFLGHVERCGALLHLVDCTEDDIVGAWKTIRGELEAYGGILATKPEILALNKIDAIPEEFIAEKKAELEAASGREVIAISGATGAGIDEALRILHRTIKQNRADEKAAAEVHIPAPSWTP 804
A G + +KVPVGTQIF++D ++ADFT VGQR LL+GG GG GN FK+S NQAPRR G GEERW+ LRLKLIADAGLVGLPNAGKSTFLSAV+ AKPK+ADYPFTTL P LGVV EFV+ADIPGLIEGA EGAGLG RFLGHVERCG L+HLVD T+DD+VGA++TIR ELEAYGG L K +IL LNKIDA+ EE +AE++A LE ASG +V+AISGATG ++ L + + N A+ A + P W P
Sbjct: 81 ADGADIVLKVPVGTQIFEEDGETLIADFTEVGQRQTLLEGGNGGFGNAHFKTSTNQAPRRANPGLPGEERWIWLRLKLIADAGLVGLPNAGKSTFLSAVTAAKPKIADYPFTTLHPGLGVVRAGAREFVLADIPGLIEGASEGAGLGDRFLGHVERCGVLIHLVDGTQDDVVGAYETIRSELEAYGGGLVGKEQILCLNKIDALDEETLAERRAALEKASGGDVLAISGATGKNVETVLYAVLDVLDHN-AENDARSSRTEPGDKWVP 347 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100361.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100361.1.1 >prot_L-digitata_M_contig100361.1.1 ID=prot_L-digitata_M_contig100361.1.1|Name=mRNA_L-digitata_M_contig100361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=262bp MKVPVGTQIFDDDNLVMLADFTRVGQRVVLLKGGRGGRGNTRFKSSRNQAback to top mRNA from alignment at L-digitata_M_contig100361:3..809+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100361.1.1 ID=mRNA_L-digitata_M_contig100361.1.1|Name=mRNA_L-digitata_M_contig100361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=807bp|location=Sequence derived from alignment at L-digitata_M_contig100361:3..809+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100361:3..809+ >mRNA_L-digitata_M_contig100361.1.1 ID=mRNA_L-digitata_M_contig100361.1.1|Name=mRNA_L-digitata_M_contig100361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=786bp|location=Sequence derived from alignment at L-digitata_M_contig100361:3..809+ (Laminaria digitata LdigPH10_18mv male)back to top |