mRNA_L-digitata_M_contig100286.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100286.1.1
Unique NamemRNA_L-digitata_M_contig100286.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: UPI00145E9084 (LysR family transcriptional regulator n=1 Tax=Chelativorans sp. ZYF759 TaxID=2692213 RepID=UPI00145E9084)

HSP 1 Score: 362 bits (929), Expect = 9.570e-123
Identity = 183/289 (63.32%), Postives = 218/289 (75.43%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWANLPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMM 867
            MN+TLRQLRAFHEVA+ +SFT AARR++LTQSAVSMLVRQLEKE G+ LF+R QR+  LTE GE MLP++ RI++DLRQ+ EG   LR L +G L+LAVPQMLACSWLP ++ ++RE + D+ L V DTTGDR++ AVL+NEAE+GIGP RP P  V A  LW EPI +VC A S L     L+W+ + GENWI YSDDFS HLERT WA     LPR T VRYL+TALA VGK +GVTAAPRYA  FA QF V FV    P L+R FYLYTR+G +LSPAA AF  M+
Sbjct:    1 MNLTLRQLRAFHEVAQTRSFTAAARRMNLTQSAVSMLVRQLEKELGMVLFNRYQRAAQLTEIGEHMLPVTERIMDDLRQIEEGATSLRMLSRGKLQLAVPQMLACSWLPPLVVRYRELHRDVVLNVTDTTGDRIVTAVLQNEAELGIGPMRPTPPGVHAEKLWDEPIQIVCAAGSKLAGNARLKWSALRGENWIQYSDDFSLHLERTAWAEYANSLPRKTHVRYLSTALALVGKGIGVTAAPRYARHFAVQFGVAFVEAHEPSLSRAFYLYTRRGQKLSPAASAFREML 289          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A844QDS3_9HYPH (LysR family transcriptional regulator n=1 Tax=Nitratireductor arenosus TaxID=2682096 RepID=A0A844QDS3_9HYPH)

HSP 1 Score: 361 bits (927), Expect = 1.190e-122
Identity = 186/292 (63.70%), Postives = 221/292 (75.68%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWANLPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMMENR 876
            MN+TLRQLRAF+EVAK +SFT AA  + LTQSAVSMLVRQLE E GL LF+RVQRS  LTE G QMLPI+ R+LEDLRQVHEG ADL+ALR+GTLR+AVPQMLACSWLP + ++F  A PDI L VMDTTGDR++ AV  NEAEIGIGP+RP P  + A  LW EPI +  P +S L +   L W D+ GENWI YSDDF+ +LERT+WA LP    R T VRYLTTAL+FVG  LGVTAAP+YA  FA QF VRF  + A ++ R FY+Y+RK +  SPAA AF + + N+
Sbjct:    1 MNITLRQLRAFYEVAKTQSFTLAASNMKLTQSAVSMLVRQLEAEYGLALFNRVQRSAQLTEVGRQMLPITERMLEDLRQVHEGAADLKALRRGTLRIAVPQMLACSWLPPLAAEFMAAFPDIGLHVMDTTGDRIVSAVQDNEAEIGIGPQRPAPAEIAAEPLWEEPIQVALPRNSPLGDADCLTWKDLRGENWIQYSDDFTLYLERTIWAKLPIPDARTTNVRYLTTALSFVGLGLGVTAAPQYARSFADQFAVRFARIEAGRIMRAFYIYSRKNHSRSPAANAFISFLNNK 292          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A2P8N877_9HYPH (LysR family transcriptional regulator n=1 Tax=Nitratireductor sp. StC3 TaxID=2126741 RepID=A0A2P8N877_9HYPH)

HSP 1 Score: 347 bits (891), Expect = 4.160e-117
Identity = 178/285 (62.46%), Postives = 212/285 (74.39%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWANLPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAF 855
            MN+TLRQL AF+EVAK +SFT AAR ++LTQSAVSMLVRQLE E GL LF RVQRS  LTE G QMLP++ R+LEDLRQVHEG  DL+ALR+G LR+AVPQMLACSWLP + ++F  A PDI L VMDTTGDR++ AV  NEAEIGIGP+RP P  + A  LW EPI +V P  S L +   L W D+  ENWI YSDDF+ +LER +WA LP    R T VRYLTTAL+FVG  LGVTAAP+YA  FA QF V+F  +   ++ R FY+Y+R+ +  SPAA AF
Sbjct:    1 MNITLRQLHAFYEVAKTQSFTLAARNMNLTQSAVSMLVRQLEAEYGLALFDRVQRSAQLTEVGRQMLPVTERMLEDLRQVHEGAEDLKALRRGRLRIAVPQMLACSWLPPLAAEFMAAFPDIGLHVMDTTGDRIVSAVQDNEAEIGIGPQRPAPADIAAEPLWEEPIQIVLPRASALGDGAPLTWKDLRNENWIQYSDDFTLYLERAIWAELPIPEARTTSVRYLTTALSFVGLGLGVTAAPQYARSFADQFAVKFARVETGRIMRAFYIYSRRNHSRSPAANAF 285          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A7X2KF18_9PROT (LysR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KF18_9PROT)

HSP 1 Score: 333 bits (853), Expect = 2.280e-111
Identity = 168/293 (57.34%), Postives = 218/293 (74.40%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWAN-LPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMMENR 876
            MN+TLRQLRAF  VA A SFT AA  +HLTQSAVSMLVRQLE E G+ LF RV R V+LTEAG Q+LP++ R+L+DLRQV EG  D+R L++G LRLAVPQMLAC+W+P  I +FR   P++ L++ DTT DR+I ++  +EAEIGIGP+R IP+ + A  LW EP+ +VCPADS L ++P L+W D +GE WI+YS++FS H++RT+ ++    +L  AT+VRYLTTAL+ V K +GVT APRYA++ A+ FNVRF+ L      R F +Y R GYELSPAA AF  M+  R
Sbjct:    1 MNITLRQLRAFRSVADAASFTLAANNMHLTQSAVSMLVRQLETEFGMPLFDRVNRKVLLTEAGRQILPLARRMLDDLRQVEEGAVDMRELQRGILRLAVPQMLACAWIPDAIGEFRARYPNVTLKLFDTTPDRIISSIQAHEAEIGIGPERAIPNDLQADFLWDEPLQIVCPADSPLADKPKLRWRDTVGERWIIYSNEFSGHIQRTLESSQTSLRLSDATEVRYLTTALSLVSKGVGVTVAPRYANNLASGFNVRFIDLEDEPNQRAFSVYQRNGYELSPAAAAFVEMLRER 293          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A5B8FXD7_9RHOB (LysR family transcriptional regulator n=2 Tax=Paroceanicella profunda TaxID=2579971 RepID=A0A5B8FXD7_9RHOB)

HSP 1 Score: 324 bits (830), Expect = 7.160e-107
Identity = 172/291 (59.11%), Postives = 213/291 (73.20%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWANLP-FQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMME 870
            MN+TLRQLRAF  VA+A+SFT AA RLHLTQSAVSMLVRQLE + GL LF R  R+V LTEAG  +LP + R+L DL++V +G  DLR LR+G+LR+A PQM ACS LP  + +F    PDI+L ++D T D V EAV +++AEIG+GP+RP+PD VT   LW EPIDLVC A S       L WADVL E W+LYSD+F+ HLER +    P F+L RAT+ RY+TTALA VG+ +GVTAAPRY + FA  F VRFV L AP + R+F LY R+G+ LSPAA+AF A +E
Sbjct:    1 MNITLRQLRAFVAVAEARSFTEAAVRLHLTQSAVSMLVRQLEADFGLPLFVRTTRAVSLTEAGLGLLPAAQRMLADLQEVFDGARDLRELRRGSLRIAAPQMFACSLLPRSVERFHAEYPDISLGIIDVTADEVGEAVRRHDAEIGVGPERPVPDDVTRTLLWAEPIDLVCHAGSRWAGARRLAWADVLAEPWVLYSDEFAAHLERLLHPGQPGFRLHRATEARYMTTALALVGRGVGVTAAPRYVAPFAAGFGVRFVELEAPAVRRNFCLYRRRGFALSPAAEAFLARLE 291          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: UPI001AE1C4DD (LysR family transcriptional regulator n=1 Tax=Aureimonas populi TaxID=1701758 RepID=UPI001AE1C4DD)

HSP 1 Score: 314 bits (804), Expect = 6.650e-104
Identity = 166/293 (56.66%), Postives = 211/293 (72.01%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPD-TVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWANLPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMMENR 876
            MN+TLRQLRAF EVA+ +SFT AAR L+LTQSAVSMLVRQLE E G+ LFHRVQRS  LTE G+QMLP++ RILEDLR+  EGV D+R L++GTLRLAVPQ+LAC WLP +++ F   +P I + V+DTTGD++I AV  NEAEIGIGP+R  PD T+ A  L+  PI +V P       R  + W +VL  NWI YSDDFS ++ERT+  ++   + R++ VRYL+TALAFVG+ +G+TAAP YA  F   F VRFV +    + R FYLY R+ + LSPAA+ F  +M  R
Sbjct:    1 MNLTLRQLRAFVEVARLQSFTLAARNLNLTQSAVSMLVRQLEIESGVALFHRVQRSAQLTEIGQQMLPVAERILEDLRRFGEGVDDIRMLKRGTLRLAVPQILACCWLPGIVADFSADHPHIGVHVVDTTGDQIIAAVEDNEAEIGIGPQRAAPDPTIEAQPLFEVPIQIVVPDRGGQDPRGSVSWEEVLDANWIHYSDDFSVYIERTILNDMSLHMKRSSNVRYLSTALAFVGRGMGITAAPSYADVFRQHFKVRFVPIENRPILRKFYLYRRRNHHLSPAAETFIELMRAR 293          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A4Q6FL24_9GAMM (LysR family transcriptional regulator n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6FL24_9GAMM)

HSP 1 Score: 293 bits (750), Expect = 1.330e-95
Identity = 150/293 (51.19%), Postives = 202/293 (68.94%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWAN-LPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMMENR 876
            MN+TLRQ+RAF  VA+A SFT AAR+L+LTQSAVSMLV+QLE+E GLRLF R + SV LTE+G+Q+LP++ R+LEDLRQV EG +DLR LR G LR+  PQ+LAC+W+  V+ +F  A P + L VMD T D ++ +V + +AE+GIGP+RP  + VT   L   P+ LVC A   L +R  + W ++  E W++YS DF+  +E+ +  +     +  AT+V YLTTALA VG  +GV A P YA  FA  F +RF+ L AP L R F++Y R+G  LSPAA+AF  +M  R
Sbjct:    1 MNITLRQMRAFSTVARAGSFTSAARQLNLTQSAVSMLVQQLEEELGLRLFDRTRSSVTLTESGQQLLPLARRMLEDLRQVEEGASDLRTLRSGMLRVVAPQLLACTWMAGVLGEFEAAFPSVGLRVMDATADDIVGSVRRGDAELGIGPERPTGEDVTRTFLMNVPMRLVCAASHPLADRQSVSWRELQDERWVVYSGDFNRFVEKLLHDHDTSLSIQTATEVGYLTTALALVGTGMGVAAVPDYARGFAGNFGIRFIALRAPALNREFFVYQRRGLALSPAAEAFTQLMRQR 293          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A368XB59_9BURK (DNA-binding transcriptional LysR family regulator n=3 Tax=Pseudorhodoferax TaxID=747294 RepID=A0A368XB59_9BURK)

HSP 1 Score: 281 bits (720), Expect = 2.750e-91
Identity = 142/290 (48.97%), Postives = 200/290 (68.97%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWAN-LPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMM 867
            MN+TLRQ+RAF  VA++ SFT AAR+L+LTQSAVSMLV+QLE E G++LF R + +V LTEAG+Q+LP++ R+L+DLRQ+ EG  DLR+L+ G LR+  PQ++AC+W+  V+++F  A+P + L ++D +   ++  V + +AE+GIGP+R   + VT   L   P+ LVC A   L  R  +QW ++ GE W++YS DFS ++E  + A+     +  AT+VRYLTTALA VG  LGV   P YA  FA  F +RF+ L AP L R F++Y R+   LSPAAQAF  M+
Sbjct:    1 MNLTLRQMRAFSVVARSASFTLAARQLNLTQSAVSMLVQQLEDELGVKLFDRTRNAVTLTEAGQQLLPLARRMLDDLRQIEEGAGDLRSLKSGVLRVVAPQLMACTWVAGVLARFERAHPQVGLRIVDGSAGDIVGTVRRGDAELGIGPERATGEDVTRSFLMHVPMRLVCAATHALAAREAVQWRELQGERWVVYSGDFSRYVEERLHAHDASLSMQTATEVRYLTTALALVGAGLGVAMVPDYARSFAANFGIRFLALRAPALNREFFVYQRRSLALSPAAQAFAQML 290          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: UPI000EF5F1BA (LysR family transcriptional regulator n=2 Tax=Burkholderiales TaxID=80840 RepID=UPI000EF5F1BA)

HSP 1 Score: 281 bits (719), Expect = 4.290e-91
Identity = 141/291 (48.45%), Postives = 201/291 (69.07%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWAN-LPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMME 870
            MN+TLRQ+RAF  VA+  SFT AAR+L+LTQSAVSMLV+QLE+E GL+LF R + +V LTE G+Q+LP++ R+L+DLRQ+ EG  DLR LR G LR+  PQ++AC+W+  V+++F +A+P + L ++D + D ++ AV + +AE+GIGP+R   + VT   L   P+ LVC A   L  R  + W D+  + W++YS DFS ++E+ +  +     +  AT+VRYLTTALA VG  LGV   P YA  FA  F +RF+ L +P L R F++Y R+   LSPAAQAF A+++
Sbjct:    1 MNLTLRQMRAFSVVARTASFTLAARQLNLTQSAVSMLVQQLEEELGLKLFDRSRHAVTLTEGGQQLLPLARRMLDDLRQIEEGATDLRLLRSGVLRVVAPQLMACTWVAGVLARFEQAHPTVGLRIVDGSADDIVGAVRRGDAELGIGPERVTGEDVTRSFLMHVPMRLVCAASHPLAGRQTVSWRDLRDQRWVVYSGDFSRYVEQRLHEHDASLSMQTATEVRYLTTALALVGAGLGVAMVPDYARSFAGNFGIRFLALRSPALNREFFVYQRRSLALSPAAQAFAALLQ 291          
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Match: A0A1H4HSV5_9BURK (DNA-binding transcriptional regulator, LysR family n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1H4HSV5_9BURK)

HSP 1 Score: 281 bits (719), Expect = 5.390e-91
Identity = 140/290 (48.28%), Postives = 198/290 (68.28%), Query Frame = 1
Query:    1 MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLFHRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVPQMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPKRPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDFSDHLERTVWAN-LPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFATQFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMM 867
            M++TLRQ+RAF  VA+  SFT AAR+L+LTQSAVSMLV+QLE   GL+LF R + ++ LTEAG Q+LP++ R+L+DLRQ+ EG +DLR LR G LR+  PQ++AC+W+  V+ +F +A+P + L ++D T D ++ +V + +AE+GIGP+RP  D VT   L   P+ LVC A   L  R  + W ++  E W++YS DFS ++E+ +  +     +  AT+V YLTTALA VG  +GV   P YA  FA  F +RF+ L AP L R F++Y R+G  LSPAA+AF  M+
Sbjct:    1 MSITLRQMRAFSVVARTASFTIAARQLNLTQSAVSMLVQQLEDTMGLKLFDRTRNAITLTEAGRQLLPLARRMLDDLRQLEEGASDLRTLRSGMLRVVAPQLMACTWVAGVVGRFEKAHPTVGLRLVDATADDIVGSVRRGDAELGIGPERPTGDDVTRSFLMNVPMRLVCAASHPLAERQTVSWQELRNERWVVYSGDFSRYVEQRLHEHDASLSMQTATEVGYLTTALALVGTGMGVATVPDYARGFAGNFGIRFIALRAPALNREFFVYQRRGLALSPAAEAFAQML 290          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100286.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00145E90849.570e-12363.32LysR family transcriptional regulator n=1 Tax=Chel... [more]
A0A844QDS3_9HYPH1.190e-12263.70LysR family transcriptional regulator n=1 Tax=Nitr... [more]
A0A2P8N877_9HYPH4.160e-11762.46LysR family transcriptional regulator n=1 Tax=Nitr... [more]
A0A7X2KF18_9PROT2.280e-11157.34LysR family transcriptional regulator n=1 Tax=Alph... [more]
A0A5B8FXD7_9RHOB7.160e-10759.11LysR family transcriptional regulator n=2 Tax=Paro... [more]
UPI001AE1C4DD6.650e-10456.66LysR family transcriptional regulator n=1 Tax=Aure... [more]
A0A4Q6FL24_9GAMM1.330e-9551.19LysR family transcriptional regulator n=1 Tax=Xant... [more]
A0A368XB59_9BURK2.750e-9148.97DNA-binding transcriptional LysR family regulator ... [more]
UPI000EF5F1BA4.290e-9148.45LysR family transcriptional regulator n=2 Tax=Burk... [more]
A0A1H4HSV5_9BURK5.390e-9148.28DNA-binding transcriptional regulator, LysR family... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100286contigL-digitata_M_contig100286:51..926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog335659.S23_55200
PFAMsHTH_1,LysR_substrate
Model size876
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.5e-85
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1MUWX@1224|Proteobacteria,2TU0X@28211|Alphaproteobacteria,3JVPS@41294|Bradyrhizobiaceae
DescriptionBacterial regulatory helix-turn-helix protein, lysR family
Cds size876
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.536981-CDS-L-digitata_M_contig100286:50..9261682406605.536981-CDS-L-digitata_M_contig100286:50..926Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100286 51..926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100286.1.1prot_L-digitata_M_contig100286.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100286 51..926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100286.1.1

>prot_L-digitata_M_contig100286.1.1 ID=prot_L-digitata_M_contig100286.1.1|Name=mRNA_L-digitata_M_contig100286.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=292bp
MNVTLRQLRAFHEVAKAKSFTRAARRLHLTQSAVSMLVRQLEKECGLRLF
HRVQRSVILTEAGEQMLPISGRILEDLRQVHEGVADLRALRKGTLRLAVP
QMLACSWLPAVISKFREANPDIALEVMDTTGDRVIEAVLKNEAEIGIGPK
RPIPDTVTAHGLWGEPIDLVCPADSDLLNRPDLQWADVLGENWILYSDDF
SDHLERTVWANLPFQLPRATQVRYLTTALAFVGKRLGVTAAPRYASDFAT
QFNVRFVGLGAPQLTRHFYLYTRKGYELSPAAQAFHAMMENR
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mRNA from alignment at L-digitata_M_contig100286:51..926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100286.1.1 ID=mRNA_L-digitata_M_contig100286.1.1|Name=mRNA_L-digitata_M_contig100286.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=876bp|location=Sequence derived from alignment at L-digitata_M_contig100286:51..926+ (Laminaria digitata LdigPH10_18mv male)
ATGAATGTGACATTGCGACAATTGCGCGCCTTCCATGAAGTCGCCAAAGC CAAAAGCTTCACGCGAGCCGCCCGCCGCTTGCACCTGACGCAGTCAGCCG TCAGCATGCTTGTCCGGCAGCTTGAAAAGGAGTGCGGTCTGCGGCTGTTT CACCGTGTCCAGCGCAGCGTCATCCTGACGGAGGCCGGCGAGCAGATGCT GCCGATCAGCGGGCGCATCCTCGAGGATCTCCGCCAGGTTCACGAGGGCG TCGCTGACCTGCGTGCCCTTCGCAAGGGTACGCTTCGTCTTGCCGTGCCG CAGATGCTCGCCTGCTCATGGTTGCCGGCGGTGATTTCGAAATTCCGAGA GGCCAATCCAGACATCGCGCTTGAAGTGATGGACACCACCGGCGACAGGG TCATCGAGGCCGTCTTGAAGAATGAGGCCGAGATCGGCATCGGTCCAAAG CGCCCGATCCCCGATACGGTAACTGCCCATGGGCTGTGGGGGGAACCGAT CGATCTTGTCTGCCCGGCCGATAGTGACCTTCTGAATCGGCCTGACCTTC AATGGGCCGATGTGCTGGGCGAAAACTGGATCCTCTATTCGGACGATTTC AGCGACCATCTGGAGCGCACCGTTTGGGCCAACCTGCCCTTCCAACTGCC ACGCGCGACGCAGGTCCGCTACCTCACCACCGCGCTCGCCTTTGTCGGCA AGAGGCTGGGTGTGACTGCCGCACCGCGCTACGCGTCGGACTTTGCAACG CAGTTCAATGTTCGATTTGTCGGCCTCGGCGCACCGCAACTAACCCGGCA TTTCTACCTCTACACAAGAAAAGGCTATGAACTTTCGCCGGCGGCTCAGG CCTTTCATGCCATGATGGAAAACCGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100286:51..926+

>mRNA_L-digitata_M_contig100286.1.1 ID=mRNA_L-digitata_M_contig100286.1.1|Name=mRNA_L-digitata_M_contig100286.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=876bp|location=Sequence derived from alignment at L-digitata_M_contig100286:51..926+ (Laminaria digitata LdigPH10_18mv male)
ATGAATGTGACATTGCGACAATTGCGCGCCTTCCATGAAGTCGCCAAAGC
CAAAAGCTTCACGCGAGCCGCCCGCCGCTTGCACCTGACGCAGTCAGCCG
TCAGCATGCTTGTCCGGCAGCTTGAAAAGGAGTGCGGTCTGCGGCTGTTT
CACCGTGTCCAGCGCAGCGTCATCCTGACGGAGGCCGGCGAGCAGATGCT
GCCGATCAGCGGGCGCATCCTCGAGGATCTCCGCCAGGTTCACGAGGGCG
TCGCTGACCTGCGTGCCCTTCGCAAGGGTACGCTTCGTCTTGCCGTGCCG
CAGATGCTCGCCTGCTCATGGTTGCCGGCGGTGATTTCGAAATTCCGAGA
GGCCAATCCAGACATCGCGCTTGAAGTGATGGACACCACCGGCGACAGGG
TCATCGAGGCCGTCTTGAAGAATGAGGCCGAGATCGGCATCGGTCCAAAG
CGCCCGATCCCCGATACGGTAACTGCCCATGGGCTGTGGGGGGAACCGAT
CGATCTTGTCTGCCCGGCCGATAGTGACCTTCTGAATCGGCCTGACCTTC
AATGGGCCGATGTGCTGGGCGAAAACTGGATCCTCTATTCGGACGATTTC
AGCGACCATCTGGAGCGCACCGTTTGGGCCAACCTGCCCTTCCAACTGCC
ACGCGCGACGCAGGTCCGCTACCTCACCACCGCGCTCGCCTTTGTCGGCA
AGAGGCTGGGTGTGACTGCCGCACCGCGCTACGCGTCGGACTTTGCAACG
CAGTTCAATGTTCGATTTGTCGGCCTCGGCGCACCGCAACTAACCCGGCA
TTTCTACCTCTACACAAGAAAAGGCTATGAACTTTCGCCGGCGGCTCAGG
CCTTTCATGCCATGATGGAAAACCGT
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