mRNA_L-digitata_M_contig10250.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10250.3.1
Unique NamemRNA_L-digitata_M_contig10250.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10250.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10250contigL-digitata_M_contig10250:2588..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size688
Hectar predicted targeting categoryother localisation
Exons3
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.115325-CDS-L-digitata_M_contig10250:2587..26741682406630.115325-CDS-L-digitata_M_contig10250:2587..2674Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 2588..2674 +
1682406630.1259482-CDS-L-digitata_M_contig10250:3174..35941682406630.1259482-CDS-L-digitata_M_contig10250:3174..3594Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 3175..3594 +
1682406630.135124-CDS-L-digitata_M_contig10250:4570..47501682406630.135124-CDS-L-digitata_M_contig10250:4570..4750Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 4571..4750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10250.3.1prot_L-digitata_M_contig10250.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10250 2588..4750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10250.3.1

>prot_L-digitata_M_contig10250.3.1 ID=prot_L-digitata_M_contig10250.3.1|Name=mRNA_L-digitata_M_contig10250.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=229bp
GILAGVLSDSTNSKRNLETPGERIRRARKERLNPGSSEGRDRWADEENSN
TRNAFTSLGNPTGLFRNNASSGGAGTLPGKHDSCVDAEGNIDYLRVMTNR
GDGGGPSPAGGVSRLQNASGVFHTHGGGKRGEGLLPSRSSLGGSSRLGGA
VAVPPWKKMLELDEEERKQVDAAMAASQEEACERGAAHEESELDRAIRLS
REEEPLSPTTMMMLTPPEEEFEAAQLEAL
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mRNA from alignment at L-digitata_M_contig10250:2588..4751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10250.3.1 ID=mRNA_L-digitata_M_contig10250.3.1|Name=mRNA_L-digitata_M_contig10250.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2164bp|location=Sequence derived from alignment at L-digitata_M_contig10250:2588..4751+ (Laminaria digitata LdigPH10_18mv male)
GGGATATTGGCGGGCGTACTGTCGGACTCGACGAACAGCAAGAGGAACCT
GGAGACGCCGGGGGAGAGGATCCGACGAGCGCGAAAGGCAAGCTTATTCG
GAACGTCAACATCGTGAATTGCAACTGTAGACCATAACAGCATGGTGTTA
GCGGAGGCGTGCGTCGTGACGCGGTTTGCGGGATGCGGGGTCCCCGACCC
GGGGGGGGCGGAGAGGGCGTATCCTTTTTTTCCGCTCGTTCGTGTGTGTG
TGTTTGCGTGTGAATGGGGGAAGGGGGGGCAGTAGGTGTGTTCGAGCCGG
TTTTCGTGCGGAGGAGCAGGAGGAGGTAGAGTGGTGCGGACGCTGTTATC
GCTGGTCGTTTCTTGCCGCTACTCTGCTCTCCGGGTGTTTGTAGAGAGCT
CATCAAGCTACTTCTTTTTTTTTAGCCCGATCCGATCCTACGTGAGCAGG
AATGATCTCCATGTGTCGTCAAAATGGCAATATAAATCTTTGACGACCCC
TCCCCCCCCTCCCCCTCCCCCTCCCCGTCCCCGTGCCCCTCGCCCCCCCC
GCCCTCTTTACCACAAATCGTCTCTCGGCCACCCCAGGAGCGACTAAACC
CCGGCAGCTCTGAGGGCCGGGACCGGTGGGCAGACGAGGAAAATTCGAAC
ACCCGAAACGCCTTCACCAGCCTTGGAAACCCCACTGGTCTATTCCGGAA
CAACGCCTCCTCAGGTGGGGCGGGGACGCTCCCGGGAAAACACGACTCCT
GTGTAGACGCCGAAGGCAACATCGACTACTTACGGGTGATGACCAACAGA
GGGGACGGGGGTGGCCCGTCCCCGGCTGGAGGCGTTAGTCGCCTCCAGAA
TGCGTCGGGGGTGTTCCACACGCACGGCGGTGGGAAGAGGGGGGAGGGGT
TGCTTCCTTCTCGGTCGTCGTTGGGAGGGTCGAGTCGGCTCGGAGGGGCG
GTAGCGGTGCCGCCGTGGAAGAAGATGCTCGAGCTTGACGAGGAAGAGAG
GAAGCAGGTGGGTCTGCTGCGTCTGTTGCGTCTGCTGTGTCAGCGTCTTC
CGTGTCTGCGTCTGCTGCTGTTTAGCTGCTGCTGCTGCTGCTATTGCTGC
TGCTATTGCTGCTGCTGCTGCTGCGGCGGTGGCGGCGACGGCCGCTTTCT
CATGTTGGCTTTCATGCGGTTCGATGTCGCGCGCAGAGAACCCTCCCGCC
CGCCCCGATACGTTGGGCGGAAACGCCGACTGGCACGGTGAAACCCTCCG
GACGAGTAATTTGTTGGTTTCTTTTTTCTATTTTCCTTCGTATTTGTTGT
TCCAATTTTCACAAAAAAATCCTCTGTAGTCGTTTGGGTTGGAGAGAGAC
ATTCAGACAGACAGATAAACAGAGCGAAAGAAAGACAGACAGACAGACAG
AGACGGACAGAGAGAGCGGTAGACAGACCGCAGAGAGAAAGACAGACGGA
CAGACAGACAGACAGACAGAATGACAGACGGAGCTGAGTTTTTGGCTCCT
TCCGTTCGATGAACGCCCGCTGTACCTGGGTGCATGCTCGGTGCCCCCCT
TTTGTCCGTGCTCCCTGCTTCCTCCTCCCTGATACGCCGTGGTGTGTGCG
TGTGTTGCACGAATCGTTTCCTTTCTTGGTGGGTGCATGCTCTGTGCCCC
CTTTCTCCCTTCCCCTGGACGCATCTGTGTGTGTGTAGGTGCATGCTCCG
TGCCCCACTTATCCCTCCTCCTGAACGCGCCTGTTTGTGAGTTTGCGTGC
TACGCGGGTCGTTCGTTTTCGTGGCGGGTTGCATGCTCCGTATCTCCCTG
CTTCCTCTTCCTGAACGCGCCTGTGTGTGTACGTGTGCGTGTTCGCGTGC
GTGTGTGTCCGCGTGCGTGTGTGTCCGCGTGTGTGTGTGCGTGTGTGTGC
GTGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGCTACGCGAATCGTTTCC
TTTCCTGGCGGTGATGATGGTCGGAGAGAGCAGGTCGACGCGGCGATGGC
CGCCTCCCAAGAGGAAGCCTGCGAGCGGGGCGCGGCCCACGAAGAGTCGG
AGCTCGATCGAGCGATCCGGCTGAGCCGAGAGGAGGAGCCGCTGTCGCCG
ACGACGATGATGATGCTGACGCCGCCAGAGGAGGAGTTCGAGGCGGCGCA
GCTCGAGGCGTTGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10250:2588..4751+

>mRNA_L-digitata_M_contig10250.3.1 ID=mRNA_L-digitata_M_contig10250.3.1|Name=mRNA_L-digitata_M_contig10250.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=687bp|location=Sequence derived from alignment at L-digitata_M_contig10250:2588..4751+ (Laminaria digitata LdigPH10_18mv male)
GGGATATTGGCGGGCGTACTGTCGGACTCGACGAACAGCAAGAGGAACCT
GGAGACGCCGGGGGAGAGGATCCGACGAGCGCGAAAGGAGCGACTAAACC
CCGGCAGCTCTGAGGGCCGGGACCGGTGGGCAGACGAGGAAAATTCGAAC
ACCCGAAACGCCTTCACCAGCCTTGGAAACCCCACTGGTCTATTCCGGAA
CAACGCCTCCTCAGGTGGGGCGGGGACGCTCCCGGGAAAACACGACTCCT
GTGTAGACGCCGAAGGCAACATCGACTACTTACGGGTGATGACCAACAGA
GGGGACGGGGGTGGCCCGTCCCCGGCTGGAGGCGTTAGTCGCCTCCAGAA
TGCGTCGGGGGTGTTCCACACGCACGGCGGTGGGAAGAGGGGGGAGGGGT
TGCTTCCTTCTCGGTCGTCGTTGGGAGGGTCGAGTCGGCTCGGAGGGGCG
GTAGCGGTGCCGCCGTGGAAGAAGATGCTCGAGCTTGACGAGGAAGAGAG
GAAGCAGGTCGACGCGGCGATGGCCGCCTCCCAAGAGGAAGCCTGCGAGC
GGGGCGCGGCCCACGAAGAGTCGGAGCTCGATCGAGCGATCCGGCTGAGC
CGAGAGGAGGAGCCGCTGTCGCCGACGACGATGATGATGCTGACGCCGCC
AGAGGAGGAGTTCGAGGCGGCGCAGCTCGAGGCGTTG
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