mRNA_L-digitata_M_contig100201.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100201.1.1
Unique NamemRNA_L-digitata_M_contig100201.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A2D7FK32_9PROT (LuxR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FK32_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 3.090e-19
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDFD F++DR ETIQRAR AGVATMVTICT VTRF++ RAIAE
Sbjct:    1 MLVDSHCHLDFDDFNKDRVETIQRARTAGVATMVTICTRVTRFEQIRAIAE 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A2D8G3E7_9PROT (LuxR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G3E7_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-18
Identity = 35/51 (68.63%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDFDVF+EDR +T++RA+DAG+ TM+TICTHVTRF++  +IA+
Sbjct:    1 MLVDSHCHLDFDVFNEDRTDTVRRAKDAGIGTMLTICTHVTRFEKILSIAQ 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A3D2BVD5_9PROT (LuxR family transcriptional regulator n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BVD5_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 1.680e-18
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDFDVFDEDR + IQRA+DAG+ TMVTICT VTRF+   +IAE
Sbjct:    1 MLVDSHCHLDFDVFDEDRADAIQRAKDAGIGTMVTICTRVTRFEGILSIAE 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A2S6QBP8_9PROT (Putative metal-dependent hydrolase YcfH n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QBP8_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 4.620e-18
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDFDVFDEDR +TI+RA+DAG+ TMVTICT VTRF +   IAE
Sbjct:    1 MLVDSHCHLDFDVFDEDRADTIRRAKDAGIGTMVTICTRVTRFAQILNIAE 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A2S6U4S2_9PROT (Putative metal-dependent hydrolase YcfH n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin1 TaxID=2013074 RepID=A0A2S6U4S2_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 7.370e-16
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIA 150
            +LVDSHCHLDFDVF++DR + I RA +AGV T+VTICTH++RF+  RAIA
Sbjct:    1 MLVDSHCHLDFDVFEDDREDMITRAAEAGVGTLVTICTHLSRFEAVRAIA 50          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A222F266_9HYPH (LuxR family transcriptional regulator n=2 Tax=Stappiaceae TaxID=2821832 RepID=A0A222F266_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 1.510e-15
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDF  FD +R E I+RAR AGV  MVTICTH+ +FD+ RAIAE
Sbjct:    1 MLVDSHCHLDFPDFDGERAELIERARSAGVELMVTICTHIRKFDQIRAIAE 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A7W9ZH63_NOVIT (TatD DNase family protein n=2 Tax=Novispirillum itersonii TaxID=189 RepID=A0A7W9ZH63_NOVIT)

HSP 1 Score: 75.5 bits (184), Expect = 3.640e-15
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDF  F E+ P+ I RA  AGV+TM+TICTH++RF+R RA+AE
Sbjct:    1 MLVDSHCHLDFPDFSEELPDVIARAEGAGVSTMLTICTHLSRFERVRAVAE 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: A0A2E6GN30_9PROT (LuxR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GN30_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 5.480e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDFD FD DRP+TIQRA D+GV  +VTICTH ++F    +IA 
Sbjct:    1 MLVDSHCHLDFDSFDNDRPQTIQRAFDSGVGALVTICTHFSKFPEIVSIAN 51          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: UPI001FCE9497 (TatD family hydrolase n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI001FCE9497)

HSP 1 Score: 74.7 bits (182), Expect = 8.610e-15
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +L+DSHCHLDF+ FDEDR E + RA+ AGV  MVTICT V +FD+ +A+AE
Sbjct:   17 LLIDSHCHLDFEQFDEDRDELVTRAQQAGVGRMVTICTRVRKFDQVKAVAE 67          
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Match: UPI000490B157 (TatD family hydrolase n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI000490B157)

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-14
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIAE 153
            +LVDSHCHLDF  F +D  E + RAR AGV  MVTICTH++RFDR RAIAE
Sbjct:    1 MLVDSHCHLDFPDFADDLDEIVARARRAGVGRMVTICTHLSRFDRVRAIAE 51          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FK32_9PROT3.090e-1980.39LuxR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A2D8G3E7_9PROT1.200e-1868.63LuxR family transcriptional regulator n=1 Tax=Alph... [more]
A0A3D2BVD5_9PROT1.680e-1874.51LuxR family transcriptional regulator n=2 Tax=Rhod... [more]
A0A2S6QBP8_9PROT4.620e-1874.51Putative metal-dependent hydrolase YcfH n=1 Tax=Al... [more]
A0A2S6U4S2_9PROT7.370e-1668.00Putative metal-dependent hydrolase YcfH n=1 Tax=Al... [more]
A0A222F266_9HYPH1.510e-1568.63LuxR family transcriptional regulator n=2 Tax=Stap... [more]
A0A7W9ZH63_NOVIT3.640e-1564.71TatD DNase family protein n=2 Tax=Novispirillum it... [more]
A0A2E6GN30_9PROT5.480e-1564.71LuxR family transcriptional regulator n=1 Tax=Rhod... [more]
UPI001FCE94978.610e-1562.75TatD family hydrolase n=1 Tax=Lentilitoribacter sp... [more]
UPI000490B1571.100e-1468.63TatD family hydrolase n=1 Tax=Azospirillum halopra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100201contigL-digitata_M_contig100201:5..157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1279038.KB907337_gene419
PFAMsTatD_DNase
Model size153
Max annot lvl204441|Rhodospirillales
KEGG koko:K03424
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.97e-16
EggNOG OGsCOG0084@1|root,COG0084@2|Bacteria,1MUC0@1224|Proteobacteria,2TS88@28211|Alphaproteobacteria,2JR2C@204441|Rhodospirillales
DescriptionTatD related DNase
Cds size153
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.8212752-CDS-L-digitata_M_contig100201:4..1571682406604.8212752-CDS-L-digitata_M_contig100201:4..157Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100201 5..157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100201.1.1prot_L-digitata_M_contig100201.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100201 5..157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100201.1.1

>prot_L-digitata_M_contig100201.1.1 ID=prot_L-digitata_M_contig100201.1.1|Name=mRNA_L-digitata_M_contig100201.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=51bp
VLVDSHCHLDFDVFDEDRPETIQRARDAGVATMVTICTHVTRFDRFRAIA
E
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mRNA from alignment at L-digitata_M_contig100201:5..157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100201.1.1 ID=mRNA_L-digitata_M_contig100201.1.1|Name=mRNA_L-digitata_M_contig100201.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig100201:5..157- (Laminaria digitata LdigPH10_18mv male)
GTGCTTGTAGACAGCCACTGCCACCTCGATTTCGACGTTTTTGACGAAGA CCGCCCGGAAACCATTCAACGTGCCCGGGATGCCGGCGTCGCCACCATGG TGACGATCTGTACCCATGTCACCCGGTTCGACCGGTTCCGTGCGATCGCG GAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100201:5..157-

>mRNA_L-digitata_M_contig100201.1.1 ID=mRNA_L-digitata_M_contig100201.1.1|Name=mRNA_L-digitata_M_contig100201.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig100201:5..157- (Laminaria digitata LdigPH10_18mv male)
GTGCTTGTAGACAGCCACTGCCACCTCGATTTCGACGTTTTTGACGAAGA
CCGCCCGGAAACCATTCAACGTGCCCGGGATGCCGGCGTCGCCACCATGG
TGACGATCTGTACCCATGTCACCCGGTTCGACCGGTTCCGTGCGATCGCG
GAG
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