mRNA_L-digitata_M_contig101987.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: A0A2E7PK40_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PK40_9PROT) HSP 1 Score: 322 bits (826), Expect = 1.090e-104 Identity = 160/205 (78.05%), Postives = 179/205 (87.32%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGRKRG 615
TVGPA P V+VKIAEDGE+L+RGEL MQGYWNAP+LTA+TL DGW HTGDIG+LD DGYIKITDRKKDIIVNSGGDNVSPQRVEG LVFEPE++QAMVYGDKRPHLVAVLVPD F+ SW+ NDR A+ A L+DS+ FH LR AIDRANARLS +EQVRRFI+AEE F+TEN LMTPSLKIRRH I++IY RLEALYGR +G
Sbjct: 402 TVGPALPGVDVKIAEDGEILIRGELTMQGYWNAPDLTAKTLQDGWVHTGDIGLLDADGYIKITDRKKDIIVNSGGDNVSPQRVEGALVFEPEINQAMVYGDKRPHLVAVLVPDAEFVRSWSGVNDRDANPATLADSDAFHEALRAAIDRANARLSQIEQVRRFIIAEEAFSTENGLMTPSLKIRRHAIKEIYGARLEALYGRTQG 606
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: A0A2E7I5D2_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I5D2_9PROT) HSP 1 Score: 314 bits (805), Expect = 1.470e-101 Identity = 154/202 (76.24%), Postives = 172/202 (85.15%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGR 606
TVGPAFP VE++IAEDGE+L+RGEL MQGYWNAP+LTAETL +GW HTGDIGV D DGYIKITDRKKDIIVNSGGDN+SPQRVEG LVFEPE++QAMVYGDKRPHLVA+LVPD+ F SW +NDR DLA L+D + + LR AI+R N RL EQ+RRF+VAEE FTTEN LMTPSLKIRRHEI KIY ERLEALYGR
Sbjct: 400 TVGPAFPGVELRIAEDGEILIRGELTMQGYWNAPDLTAETLREGWIHTGDIGVRDADGYIKITDRKKDIIVNSGGDNISPQRVEGALVFEPEINQAMVYGDKRPHLVALLVPDDEFFRSWTNDNDRDVDLAELTDLKPLYEALRAAIERTNERLPQTEQIRRFLVAEEPFTTENGLMTPSLKIRRHEINKIYGERLEALYGR 601
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: A0A848W506_9PROT (AMP-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W506_9PROT) HSP 1 Score: 288 bits (737), Expect = 1.680e-96 Identity = 143/201 (71.14%), Postives = 160/201 (79.60%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYG 603
TVGPA P VE+KIA DGELLVRGEL MQGYWNAP+L+AE L DGW HTGDI LD DGYIKITDRKKDIIVNSGGDNVSPQRVE L F PE++QAMVYGDKRPHLVAVLVPDE F++ W KEN DL L++ + FH LR A+D N LS +EQVRRFI+A EGF+ +N LMTP+LK RRH I + Y ERLEALYG
Sbjct: 5 TVGPALPGVEIKIAADGELLVRGELTMQGYWNAPDLSAEALKDGWVHTGDIAELDADGYIKITDRKKDIIVNSGGDNVSPQRVENALTFAPEIAQAMVYGDKRPHLVAVLVPDEEFVAKWTKENGHDRDLETLAELQPFHEALRTAVDGVNKNLSLIEQVRRFIIASEGFSIDNGLMTPTLKPRRHLITEKYGERLEALYG 205
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: UPI0018676758 (AMP-dependent synthetase/ligase n=1 Tax=Nisaea sediminum TaxID=2775867 RepID=UPI0018676758) HSP 1 Score: 274 bits (700), Expect = 6.270e-86 Identity = 135/202 (66.83%), Postives = 164/202 (81.19%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGR 606
TVGP DVEVKIA DGE+LVRGEL M+GYW PE TA+T++DGW HTGDIG +DEDGYI ITDRKKDIIVNSGGDN+SP RVEG + EPE++QAM YGDKRP+LVAVLVPD+ FI WAK N DLA L+ +E F + A++RAN RLS +E+VRRF++A+ FTTEN++MTP+LKIRRH+IR+ Y +RL+ALYGR
Sbjct: 395 TVGPPLKDVEVKIAADGEILVRGELLMKGYWLDPETTAKTIVDGWLHTGDIGKIDEDGYIVITDRKKDIIVNSGGDNISPARVEGQITVEPEIAQAMTYGDKRPYLVAVLVPDQIFIEEWAKANGAPPDLAELAGNEDFIKAIAAAMERANGRLSQIEKVRRFMLADGPFTTENAMMTPTLKIRRHKIREAYWQRLDALYGR 596
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: UPI00040B5F2E (AMP-dependent synthetase/ligase n=2 Tax=Nisaea TaxID=390876 RepID=UPI00040B5F2E) HSP 1 Score: 273 bits (698), Expect = 1.250e-85 Identity = 133/202 (65.84%), Postives = 166/202 (82.18%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGR 606
+VGP VEVKIAEDGE+L+RGEL M+GYW PE TA+T++DGW HTGDIG +DEDGYI ITDRKKDIIVNSGGDN++P +VEG L EPE+SQAM YGDKRP+LVAVLVP+++FI WAK + +A+LA LS +E F L A++RANAR+S +E+VRRF++A E FTTEN++MTP+LKIRRH+IR+ Y ERL+ LY R
Sbjct: 395 SVGPPLKGVEVKIAEDGEILIRGELLMKGYWLDPETTAQTIVDGWLHTGDIGKIDEDGYIVITDRKKDIIVNSGGDNIAPAKVEGELTIEPEISQAMTYGDKRPYLVAVLVPEQSFIEEWAKSSGVEANLADLSKNEAFGKALGGALERANARMSQIEKVRRFVIASEPFTTENAMMTPTLKIRRHKIRETYWERLDGLYAR 596
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: A0A2D8PTM2_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PTM2_9PROT) HSP 1 Score: 273 bits (697), Expect = 1.450e-85 Identity = 134/202 (66.34%), Postives = 159/202 (78.71%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGR 606
TVGP F DVEVKIA+DGE+L+RGEL MQGYWN P+ TAET+ DGW HTGDIG DEDG++ ITDRKKDIIVNSGGDN+SPQR+EG L +PE++QAMVYGDK+PHLVA++VPD F+S W KEN A+L LS E F + +A+DR N LS +E+VRRFIVA + FT EN +MTPSLKIRRH IR+ Y E LE LY R
Sbjct: 388 TVGPPFVDVEVKIADDGEILLRGELVMQGYWNMPDATAETISDGWLHTGDIGKFDEDGFLMITDRKKDIIVNSGGDNISPQRIEGFLTLQPEIAQAMVYGDKKPHLVALIVPDPDFVSDWKKENGSDANLQTLSMDESFRRGITDAVDRVNEDLSVIERVRRFIVAPDFFTIENEMMTPSLKIRRHIIREKYGEVLEGLYTR 589
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: UPI001A0A6BE0 (AMP-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A0A6BE0) HSP 1 Score: 259 bits (663), Expect = 7.460e-85 Identity = 127/201 (63.18%), Postives = 157/201 (78.11%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYG 603
+VGP DVEV+IA DGE+LVRGEL M GYWN P +TAET++DGW HTGDIGV D+DG + ITDRKKDIIVNSGGDN+SPQRVEG+L EPE+ QAMVYGD+RPHLVA +VPD+ F+S+W K+ + A+LA L F + EA+ R NA+L+ E+VRRF +A GFT +N ++TPSLKIRRH I++IY E LE LYG
Sbjct: 37 SVGPPVKDVEVQIAGDGEILVRGELLMNGYWNNPRVTAETIVDGWLHTGDIGVFDDDGCLVITDRKKDIIVNSGGDNISPQRVEGMLTVEPEIGQAMVYGDRRPHLVAPIVPDQDFVSAWGKDREGAANLASLITDADFIKAIDEAVRRVNAKLTAPERVRRFELAAAGFTIDNDMLTPSLKIRRHVIKEIYGESLETLYG 237
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: A0A2E4XN73_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XN73_9PROT) HSP 1 Score: 271 bits (692), Expect = 1.030e-84 Identity = 134/202 (66.34%), Postives = 162/202 (80.20%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKEND-RKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYG 603
TVGP DVEV+IA DGE++VRGEL MQGYWN PE TAET+ DGW HTGDIG +DEDGYI+ITDRKKDIIVNSGGDNV+PQRVEG+L EPE++QAMVYGDKRPHLVA++VPD F + W K N K +L+ L + EKF A +R+A+DR NARLS +E+VRRF + E F+ +N ++TPS+KIRRH I+ Y E LEALYG
Sbjct: 397 TVGPPMKDVEVRIASDGEIVVRGELVMQGYWNNPEATAETIRDGWLHTGDIGEIDEDGYIRITDRKKDIIVNSGGDNVAPQRVEGMLTIEPEIAQAMVYGDKRPHLVALIVPDTDFANDWVKANGGEKRELSELVEDEKFVASVRDALDRVNARLSTIERVRRFKLTAEPFSIDNEMLTPSMKIRRHIIKGRYGEDLEALYG 598
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: UPI0016782844 (long-chain fatty acid--CoA ligase n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016782844) HSP 1 Score: 269 bits (688), Expect = 3.860e-84 Identity = 126/202 (62.38%), Postives = 164/202 (81.19%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGR 606
TVGP VEV+IAEDGE+LVRG+L M+GYW PE TA+T++DGW HTGD+G + DGYI+ITDRKKDIIVNSGGDN+SP R+EG L EP++ QAMVYGDKRP+LVAV+VPD+AF+ WA +N R A+L L D E F + +A++R NA L+ +E++RRF+VA E FTTEN++MTP+LK+RRH++R+ Y E+L+ALYGR
Sbjct: 395 TVGPPLRGVEVRIAEDGEILVRGDLLMKGYWLDPETTAQTIVDGWLHTGDVGTIHPDGYIEITDRKKDIIVNSGGDNISPARLEGKLTLEPQIVQAMVYGDKRPYLVAVIVPDQAFVEEWASQNGRSANLEALCDDEGFRKAVGQAVERVNADLAQIEKIRRFVVAREPFTTENAMMTPTLKVRRHKVREHYWEKLDALYGR 596
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Match: A0A3D3VAE7_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D3VAE7_9PROT) HSP 1 Score: 268 bits (686), Expect = 8.430e-84 Identity = 130/202 (64.36%), Postives = 158/202 (78.22%), Query Frame = 1
Query: 1 TVGPAFPDVEVKIAEDGELLVRGELNMQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDNVSPQRVEGILVFEPELSQAMVYGDKRPHLVAVLVPDEAFISSWAKENDRKADLA*LSDSEKFHARLREAIDRANARLSPLEQVRRFIVAEEGFTTENSLMTPSLKIRRHEIRKIYEERLEALYGR 606
TVGPAFP VE++IAEDGE+L+RGEL MQGYWNAP+LTAETL +GW HTGDIGV D DGYIKITDRKKDIIVNSGGDN+SP RVEG+L PE+ QAMV+GDKRPHLV ++VP + WAK N++ DL L D F A + +A+DR N LS +E+VRR I+ E F+ EN +MTP++K+RRH IR Y E+LEALYG+
Sbjct: 400 TVGPAFPGVELRIAEDGEILIRGELTMQGYWNAPDLTAETLREGWIHTGDIGVRDADGYIKITDRKKDIIVNSGGDNISPARVEGMLTATPEIEQAMVHGDKRPHLVGLIVPSADYAEHWAKGNNKSTDLETLVDDADFAAAIGDAVDRVNDDLSVIERVRRTILVAEAFSIENEMMTPTMKLRRHVIRARYGEKLEALYGK 601 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101987.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101987.2.1 >prot_L-digitata_M_contig101987.2.1 ID=prot_L-digitata_M_contig101987.2.1|Name=mRNA_L-digitata_M_contig101987.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=106bp MQGYWNAPELTAETLLDGWGHTGDIGVLDEDGYIKITDRKKDIIVNSGGDback to top mRNA from alignment at L-digitata_M_contig101987:304..918- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101987.2.1 ID=mRNA_L-digitata_M_contig101987.2.1|Name=mRNA_L-digitata_M_contig101987.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=615bp|location=Sequence derived from alignment at L-digitata_M_contig101987:304..918- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101987:304..918- >mRNA_L-digitata_M_contig101987.2.1 ID=mRNA_L-digitata_M_contig101987.2.1|Name=mRNA_L-digitata_M_contig101987.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig101987:304..918- (Laminaria digitata LdigPH10_18mv male)back to top |