prot_L-digitata_M_contig9990.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9990.1.1
Unique Nameprot_L-digitata_M_contig9990.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length56
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig9990.1.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.630e-21
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0 
Query:    1 PQRWALWAEDLAYEAATKRLLRELRHLFGGLDALAPTAPNMAFALESLGEAAT 53
            PQ+W +WAEDLAYEAATKRLLRELRHL GGLDALAPTAPNMAFALESLG   T
Sbjct: 2817 PQQWDVWAEDLAYEAATKRLLRELRHLLGGLDALAPTAPNMAFALESLGAEGT 2869
[Close]
BLAST of mRNA_L-digitata_M_contig9990.1.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.100e-20
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0 
Query:    1 PQRWALWAEDLAYEAATKRLLRELRHLFGGLDALAPTAPNMAFALESLGEAAT 53
            PQ+W +WAEDLAYEAATKRLLRELRHL GGLDALAPTAPNMA ALESLG   T
Sbjct: 2853 PQQWDVWAEDLAYEAATKRLLRELRHLLGGLDALAPTAPNMAVALESLGAEGT 2905
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9990.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI4.630e-2186.79PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE4.100e-2084.91PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9990contigL-digitata_M_contig9990:182..349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9990.1.1mRNA_L-digitata_M_contig9990.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9990 182..351 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9990.1.1 ID=prot_L-digitata_M_contig9990.1.1|Name=mRNA_L-digitata_M_contig9990.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
PQRWALWAEDLAYEAATKRLLRELRHLFGGLDALAPTAPNMAFALESLGE
AATAGA
back to top