mRNA_L-digitata_M_contig9990.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9990.1.1
Unique NamemRNA_L-digitata_M_contig9990.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9990.1.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.630e-21
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 PQRWALWAEDLAYEAATKRLLRELRHLFGGLDALAPTAPNMAFALESLGEAAT 159
            PQ+W +WAEDLAYEAATKRLLRELRHL GGLDALAPTAPNMAFALESLG   T
Sbjct: 2817 PQQWDVWAEDLAYEAATKRLLRELRHLLGGLDALAPTAPNMAFALESLGAEGT 2869
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BLAST of mRNA_L-digitata_M_contig9990.1.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.100e-20
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 PQRWALWAEDLAYEAATKRLLRELRHLFGGLDALAPTAPNMAFALESLGEAAT 159
            PQ+W +WAEDLAYEAATKRLLRELRHL GGLDALAPTAPNMA ALESLG   T
Sbjct: 2853 PQQWDVWAEDLAYEAATKRLLRELRHLLGGLDALAPTAPNMAVALESLGAEGT 2905
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9990.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI4.630e-2186.79PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE4.100e-2084.91PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9990contigL-digitata_M_contig9990:182..351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G824
PFAMsC2,Rav1p_C
Model size170
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.59e-22
EggNOG OGsKOG1064@1|root,KOG1064@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009660.1
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size168
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.0460086-CDS-L-digitata_M_contig9990:181..3491682408659.0460086-CDS-L-digitata_M_contig9990:181..349Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9990 182..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9990.1.1prot_L-digitata_M_contig9990.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9990 182..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9990.1.1

>prot_L-digitata_M_contig9990.1.1 ID=prot_L-digitata_M_contig9990.1.1|Name=mRNA_L-digitata_M_contig9990.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
PQRWALWAEDLAYEAATKRLLRELRHLFGGLDALAPTAPNMAFALESLGE
AATAGA
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mRNA from alignment at L-digitata_M_contig9990:182..351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9990.1.1 ID=mRNA_L-digitata_M_contig9990.1.1|Name=mRNA_L-digitata_M_contig9990.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=170bp|location=Sequence derived from alignment at L-digitata_M_contig9990:182..351+ (Laminaria digitata LdigPH10_18mv male)
CCCCAGCGGTGGGCCCTGTGGGCGGAAGACCTGGCGTACGAGGCGGCAAC
CAAACGCCTGTTAAGGGAGCTCCGGCACCTCTTCGGCGGACTCGACGCGC
TCGCCCCAACCGCGCCCAACATGGCCTTCGCCCTAGAGTCTCTCGGCGAA
GCCGCTACCGCCGGCGCCGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig9990:182..351+

>mRNA_L-digitata_M_contig9990.1.1 ID=mRNA_L-digitata_M_contig9990.1.1|Name=mRNA_L-digitata_M_contig9990.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig9990:182..351+ (Laminaria digitata LdigPH10_18mv male)
CCCCAGCGGTGGGCCCTGTGGGCGGAAGACCTGGCGTACGAGGCGGCAAC
CAAACGCCTGTTAAGGGAGCTCCGGCACCTCTTCGGCGGACTCGACGCGC
TCGCCCCAACCGCGCCCAACATGGCCTTCGCCCTAGAGTCTCTCGGCGAA
GCCGCTACCGCCGGCGCC
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