prot_L-digitata_M_contig99653.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig99653.1.1
Unique Nameprot_L-digitata_M_contig99653.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length78
Homology
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BLAST of mRNA_L-digitata_M_contig99653.1.1 vs. uniprot
Match: A0A1Y1INU6_KLENI (CCHC-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INU6_KLENI)

HSP 1 Score: 51.6 bits (122), Expect = 8.920e-6
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:    5 SATPDPSTIICHNCGKSGHYRSGCAKKKSGSGDSA-GQKWCTVHRTTTHNDAEC---YAQGVPRSQTSNTHTAAVVGA 78
            SA  +P   IC++C +  HY + CA+K++    S   +KWCT H+T +H+ AEC    A  +PR+Q+++   AA V A
Sbjct:  170 SADSEP---ICYHCEEPSHYANRCARKRAELAKSGTSKKWCTFHKTDSHDTAECKTLQAGRLPRAQSASARAAAPVAA 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99653.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y1INU6_KLENI8.920e-638.46CCHC-type domain-containing protein n=1 Tax=Klebso... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 12..70
e-value: 1.9E-5
score: 26.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 15..28
score: 9.290097
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 6..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99653contigL-digitata_M_contig99653:629..907 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99653.1.1mRNA_L-digitata_M_contig99653.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig99653 629..916 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig99653.1.1 ID=prot_L-digitata_M_contig99653.1.1|Name=mRNA_L-digitata_M_contig99653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=78bp
MTATSATPDPSTIICHNCGKSGHYRSGCAKKKSGSGDSAGQKWCTVHRTT
THNDAECYAQGVPRSQTSNTHTAAVVGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf