mRNA_L-digitata_M_contig99653.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99653.1.1
Unique NamemRNA_L-digitata_M_contig99653.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99653.1.1 vs. uniprot
Match: A0A1Y1INU6_KLENI (CCHC-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INU6_KLENI)

HSP 1 Score: 52.8 bits (125), Expect = 3.890e-6
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 GTAMTATSATPDPSTIICHNCGKSGHYRSGCAKKKSGSGDSA-GQKWCTVHRTTTHNDAEC---YAQGVPRSQTSNTHTAAVVGA 243
            G+A+T    + D S  IC++C +  HY + CA+K++    S   +KWCT H+T +H+ AEC    A  +PR+Q+++   AA V A
Sbjct:  161 GSAITQPKPSAD-SEPICYHCEEPSHYANRCARKRAELAKSGTSKKWCTFHKTDSHDTAECKTLQAGRLPRAQSASARAAAPVAA 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99653.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y1INU6_KLENI3.890e-637.65CCHC-type domain-containing protein n=1 Tax=Klebso... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99653contigL-digitata_M_contig99653:629..916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8128.ENSONIP00000026676
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size243
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.00017
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,48JS3@7711|Chordata,49GTT@7742|Vertebrata
DescriptionPfam:UBN2_2
Cds size234
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.8029273-CDS-L-digitata_M_contig99653:628..7751682408655.8029273-CDS-L-digitata_M_contig99653:628..775Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99653 629..775 -
1682408655.815092-CDS-L-digitata_M_contig99653:820..9071682408655.815092-CDS-L-digitata_M_contig99653:820..907Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99653 821..907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.826934-UTR-L-digitata_M_contig99653:907..9161682408655.826934-UTR-L-digitata_M_contig99653:907..916Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99653 908..916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99653.1.1prot_L-digitata_M_contig99653.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99653 629..907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99653.1.1

>prot_L-digitata_M_contig99653.1.1 ID=prot_L-digitata_M_contig99653.1.1|Name=mRNA_L-digitata_M_contig99653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=78bp
MTATSATPDPSTIICHNCGKSGHYRSGCAKKKSGSGDSAGQKWCTVHRTT
THNDAECYAQGVPRSQTSNTHTAAVVGA
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mRNA from alignment at L-digitata_M_contig99653:629..916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99653.1.1 ID=mRNA_L-digitata_M_contig99653.1.1|Name=mRNA_L-digitata_M_contig99653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=288bp|location=Sequence derived from alignment at L-digitata_M_contig99653:629..916- (Laminaria digitata LdigPH10_18mv male)
GGCACGGCTATGACAGCAACTTCAGCAACACCTGATCCCAGTACCATCAT
CTGCCACAACTGCGGCAAGTCGGGGCACTACAGGAGCGGCTGCGCCGTAC
CCGCCAAGGCCCACGGAAACCGCAACAAGTCCGCCCACCAGAAGAAGAAA
TCTGGATCAGGGGACAGTGCTGGGCAGAAATGGTGCACTGTGCACAGGAC
GACCACGCACAACGACGCCGAGTGCTACGCGCAAGGGGTTCCTCGCTCAC
AGACGAGTAATACGCATACGGCGGCTGTGGTGGGCGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig99653:629..916-

>mRNA_L-digitata_M_contig99653.1.1 ID=mRNA_L-digitata_M_contig99653.1.1|Name=mRNA_L-digitata_M_contig99653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=234bp|location=Sequence derived from alignment at L-digitata_M_contig99653:629..916- (Laminaria digitata LdigPH10_18mv male)
ATGACAGCAACTTCAGCAACACCTGATCCCAGTACCATCATCTGCCACAA
CTGCGGCAAGTCGGGGCACTACAGGAGCGGCTGCGCCAAGAAGAAATCTG
GATCAGGGGACAGTGCTGGGCAGAAATGGTGCACTGTGCACAGGACGACC
ACGCACAACGACGCCGAGTGCTACGCGCAAGGGGTTCCTCGCTCACAGAC
GAGTAATACGCATACGGCGGCTGTGGTGGGCGCC
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