prot_L-digitata_M_contig99552.2.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig99552.2.1
Unique Name	prot_L-digitata_M_contig99552.2.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	177

Homology

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A2D8ZTK1_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=4 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D8ZTK1_9PROT)

HSP 1 Score: 303 bits (775), Expect = 1.940e-97
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 0

Query:    2 LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTS+RISFWYGARTQEHLAYQEDLE+LVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC
Sbjct:  432 LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSSRISFWYGARTQEHLAYQEDLEELVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A3D2LAF2_9PROT (NAD_binding_1 domain-containing protein n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A3D2LAF2_9PROT)

HSP 1 Score: 242 bits (618), Expect = 9.550e-80
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0

Query:   34 LHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            +HLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTS+RISFWYGARTQEHLAYQEDLE+LVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC
Sbjct:    1 MHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSSRISFWYGARTQEHLAYQEDLEELVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 116

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059G1Q8_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=3 Tax=Hyphomonas TaxID=85 RepID=A0A059G1Q8_9PROT)

HSP 1 Score: 194 bits (493), Expect = 1.080e-55
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 0

Query:    1 MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            +L+IRLAL K     VPVG+GSA+L T   GDT+ LRGPFGDFH+ +D  EI+FIGGGAGIAP+RSMI DQL  +  ++++SFWYGARTQE + Y+E+ E +V   PNFSWHVALS   ETD W+G RG IHE+VRDQ + SHPD+  C
Sbjct:  430 LLNIRLALAKPDTSGVPVGIGSAYLSTLGQGDTVRLRGPFGDFHVYDDGAEIVFIGGGAGIAPMRSMIHDQLVSRSRTSKVSFWYGARTQEDIVYKEEFEHIVDNCPNFSWHVALSHLNETDAWTGKRGWIHEIVRDQYLASHPDIAQC 578

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059FBM9_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FBM9_9PROT)

HSP 1 Score: 192 bits (489), Expect = 4.050e-55
Identity = 91/149 (61.07%), Postives = 111/149 (74.50%), Query Frame = 0

Query:    1 MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            ML++RLAL +     VPVG+GSAFL T   GD++ L+GPFGDFH+ +  DEIIFIGGGAGIAPIRSMI DQL V+  +++ISFWYGART E + Y ++  +L   Y NFSWHVALS   + DTWSG RGLIHE VRDQ + SHPD+  C
Sbjct:  429 MLNVRLALARPDTSGVPVGIGSAFLSTLTLGDSITLKGPFGDFHVKDADDEIIFIGGGAGIAPIRSMIQDQLSVRGRTSKISFWYGARTPEDIVYSDEFAQLADTYRNFSWHVALSHLDKDDTWSGERGLIHEFVRDQYLASHPDIGRC 577

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059E3K4_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Hyphomonas atlantica TaxID=1280948 RepID=A0A059E3K4_9PROT)

HSP 1 Score: 185 bits (470), Expect = 2.350e-52
Identity = 86/148 (58.11%), Postives = 111/148 (75.00%), Query Frame = 0

Query:    2 LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            L+IRLAL K     VPVG+GSA+L +   GD + LRGPFGDF ++E+A+E++FI GGAGIAPIRSMI+DQL+ K+TS  ISFWYG RT +H+ Y+ED + L   + NFSWHVA+SD  E   W+G RG+IHE +RDQ +  HPDL +C
Sbjct:  431 LNIRLALAKPDKAGVPVGLGSAYLTSLNRGDKVRLRGPFGDFRVDEEAEELVFIAGGAGIAPIRSMIIDQLRRKKTSRPISFWYGVRTPDHVVYKEDFKSLGDLHQNFSWHVAISDLSEHLDWTGHRGMIHETLRDQFLARHPDLGSC 578

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: UPI00127D8B23 (NADH:ubiquinone reductase (Na(+)-transporting) subunit F n=1 Tax=Desulfuromonas sp. AOP6 TaxID=1566351 RepID=UPI00127D8B23)

HSP 1 Score: 155 bits (393), Expect = 1.260e-42
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = 0

Query:    1 MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            ML++R+A P     DVP G  S+++   K GD + + GPFGDF+  +   E+IF+GGGAG+AP+RS+I DQL   +T  +ISFWYGAR+ + L Y ED ++L AAY NF+WHVALSD    D W GP G IHE++ ++ + +HP  + C
Sbjct:  225 MLNVRVATPPPRHPDVPPGKMSSYIFNLKPGDQVTISGPFGDFYARDTEAEMIFLGGGAGMAPLRSIIFDQLLRVKTKRKISFWYGARSLKELFYDEDFKELAAAYDNFTWHVALSDPLPEDNWEGPTGFIHEVLYERYLKNHPAPEDC 373

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059FIB4_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=5 Tax=Hyphomonas TaxID=85 RepID=A0A059FIB4_9PROT)

HSP 1 Score: 159 bits (402), Expect = 1.370e-42
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = 0

Query:    2 LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            L +RL L        PVG+GSA++ +R+ GDTL LRGP GDFH+ E  +E +FIGGGAGIAP+RSMI DQL  K +++R+  WYGART E LAY+E+ E+L   + NFSW  ALS       W G +G IHE+ RD  + +HPD   C
Sbjct:  430 LIVRLVLAGPEHAGAPVGLGSAYMTSRRPGDTLSLRGPLGDFHVGEHEEERVFIGGGAGIAPLRSMIRDQLLNKGSTSRMWLWYGARTPEALAYREEFEQLATDFDNFSWQAALSHLEPHQEWEGHKGWIHEIFRDNFLATHPDPGRC 577

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: UPI001903BFEC (NADH:ubiquinone reductase (Na(+)-transporting) subunit F n=1 Tax=Rhabdochromatium marinum TaxID=48729 RepID=UPI001903BFEC)

HSP 1 Score: 153 bits (387), Expect = 9.260e-42
Identity = 68/149 (45.64%), Postives = 101/149 (67.79%), Query Frame = 0

Query:    1 MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            ML++R+A P     +VP G+ S+++ + K+GD + + GPFG+F   E   E+IF+GGGAG+AP+RS I DQLK   +   ISFWYGAR++  + YQED ++L A +PNF+W++ALSD    D W GP G IH+++ D  ++ HP  + C
Sbjct:  223 MLNVRIATPPPNKANVPPGIMSSYIFSLKAGDRVMVSGPFGEFFAKETDAEMIFVGGGAGMAPMRSHIFDQLKRLDSKRNISFWYGARSKREIFYQEDFDQLAAEHPNFNWNIALSDPQPEDNWEGPTGFIHQVLFDHYLSQHPAPEDC 371

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A7Y2IQW3_9ACTN (Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2IQW3_9ACTN)

HSP 1 Score: 153 bits (387), Expect = 9.440e-42
Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = 0

Query:    1 MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            ML++R+A P   M DVP GV S+++   K GD + + GPFG+F+  E   E++F+GGGAG+AP+RS ILDQ K  +T  +I+FWYGAR+     YQED +K+    PNF+WH+ALS+    D W+G  G IH+++ D+ ++ HP  + C
Sbjct:  225 MLNVRIASPPPRMPDVPPGVMSSYIFGLKPGDEVDITGPFGEFYARETEKEMVFVGGGAGMAPMRSHILDQFKRIKTDRKITFWYGARSMREAFYQEDFDKIQEENPNFTWHLALSEPQPEDNWTGSTGFIHQVLYDEYMSKHPSPEDC 373

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BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: UPI0003B47D53 (NADH:ubiquinone reductase (Na(+)-transporting) subunit F n=1 Tax=Geovibrio sp. L21-Ace-BES TaxID=1304888 RepID=UPI0003B47D53)

HSP 1 Score: 152 bits (384), Expect = 2.660e-41
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 0

Query:    2 LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 149
            L++R+A+P     D P G GSA++ +RK GD + + GPFGDF+  E   E++FIGGGAG+AP+RS+I DQLK   T  +ISFWYGAR  + L Y+ED +KL   + NF W V++SD    D W   +G IH + RD+ +  HP  + C
Sbjct:  226 LNVRIAMPPRDKPDAPPGKGSAYVHSRKPGDKITITGPFGDFYAREGDSEMVFIGGGAGMAPLRSIIFDQLKRVNTDRKISFWYGARNLKELFYKEDFDKLEEEHENFKWFVSMSDPKPEDNWDSYKGYIHTIARDKYLAEHPAPEDC 373

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2D8ZTK1_9PROT	1.940e-97	98.65	Na(+)-translocating NADH-quinone reductase subunit...	[more]
A0A3D2LAF2_9PROT	9.550e-80	97.41	NAD_binding_1 domain-containing protein n=1 Tax=Hy...	[more]
A0A059G1Q8_9PROT	1.080e-55	61.07	Na(+)-translocating NADH-quinone reductase subunit...	[more]
A0A059FBM9_9PROT	4.050e-55	61.07	Na(+)-translocating NADH-quinone reductase subunit...	[more]
A0A059E3K4_9PROT	2.350e-52	58.11	Na(+)-translocating NADH-quinone reductase subunit...	[more]
UPI00127D8B23	1.260e-42	48.32	NADH:ubiquinone reductase (Na(+)-transporting) sub...	[more]
A0A059FIB4_9PROT	1.370e-42	51.35	Na(+)-translocating NADH-quinone reductase subunit...	[more]
UPI001903BFEC	9.260e-42	45.64	NADH:ubiquinone reductase (Na(+)-transporting) sub...	[more]
A0A7Y2IQW3_9ACTN	9.440e-42	45.64	Na(+)-translocating NADH-quinone reductase subunit...	[more]
UPI0003B47D53	2.660e-41	46.62	NADH:ubiquinone reductase (Na(+)-transporting) sub...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001709	Flavoprotein pyridine nucleotide cytochrome reductase	PRINTS	PR00371	FPNCR	coord: 53..72 score: 40.75 coord: 91..102 score: 24.04 coord: 79..88 score: 21.26
None	No IPR available	PRINTS	PR00410	PHEHYDRXLASE	coord: 53..72 score: 43.95 coord: 38..47 score: 41.05
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 1..41 e-value: 5.9E-6 score: 28.3
None	No IPR available	PIRSR	PIRSR000207-1	PIRSR000207-1	coord: 17..103 e-value: 1.8E-7 score: 27.9
None	No IPR available	PANTHER	PTHR43644	NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT	coord: 1..148
IPR001433	Oxidoreductase FAD/NAD(P)-binding	PFAM	PF00175	NAD_binding_1	coord: 54..147 e-value: 4.4E-14 score: 53.0
IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	GENE3D	3.40.50.80		coord: 52..155 e-value: 1.8E-23 score: 85.1
IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	SUPERFAMILY	52343	Ferredoxin reductase-like, C-terminal NADP-linked domain	coord: 32..141
IPR017938	Riboflavin synthase-like beta-barrel	SUPERFAMILY	63380	Riboflavin synthase domain-like	coord: 2..44

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig99552	contig	L-digitata_M_contig99552:290..820 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig99552.2.1	mRNA_L-digitata_M_contig99552.2.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig99552 280..952 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig99552.2.1 ID=prot_L-digitata_M_contig99552.2.1|Name=mRNA_L-digitata_M_contig99552.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=177bp
MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDAD
EIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLE
KLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDACM
RSSTHAGGGSVFVKISERAGQPHSVR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001709	Flavoprot_Pyr_Nucl_cyt_Rdtase
IPR001433	OxRdtase_FAD/NAD-bd
IPR039261	FNR_nucleotide-bd
IPR017938	Riboflavin_synthase-like_b-brl