mRNA_L-digitata_M_contig99552.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A2D8ZTK1_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=4 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D8ZTK1_9PROT) HSP 1 Score: 392 bits (1008), Expect = 1.180e-131 Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
ELDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKV LSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTS+RISFWYGARTQEHLAYQEDLE+LVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC
Sbjct: 387 ELDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKVKLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSSRISFWYGARTQEHLAYQEDLEELVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A3D2LAF2_9PROT (NAD_binding_1 domain-containing protein n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A3D2LAF2_9PROT) HSP 1 Score: 242 bits (618), Expect = 5.770e-79 Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 1
Query: 232 LHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
+HLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTS+RISFWYGARTQEHLAYQEDLE+LVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC
Sbjct: 1 MHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSSRISFWYGARTQEHLAYQEDLEELVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 116
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059G1Q8_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=3 Tax=Hyphomonas TaxID=85 RepID=A0A059G1Q8_9PROT) HSP 1 Score: 254 bits (650), Expect = 5.150e-78 Identity = 117/193 (60.62%), Postives = 148/193 (76.68%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
+LDLP+ V+ QW+ SG AK FGT+ P+ RTYSLAN+PGE G+ ++L+IRLAL K VPVG+GSA+L T GDT+ LRGPFGDFH+ +D EI+FIGGGAGIAP+RSMI DQL + ++++SFWYGARTQE + Y+E+ E +V PNFSWHVALS ETD W+G RG IHE+VRDQ + SHPD+ C
Sbjct: 386 QLDLPETVRGQWQASGTAKAFGTDTPLHRTYSLANSPGELGSDILLNIRLALAKPDTSGVPVGIGSAYLSTLGQGDTVRLRGPFGDFHVYDDGAEIVFIGGGAGIAPMRSMIHDQLVSRSRTSKVSFWYGARTQEDIVYKEEFEHIVDNCPNFSWHVALSHLNETDAWTGKRGWIHEIVRDQYLASHPDIAQC 578
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059FBM9_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FBM9_9PROT) HSP 1 Score: 247 bits (631), Expect = 3.290e-75 Identity = 116/192 (60.42%), Postives = 144/192 (75.00%), Query Frame = 1
Query: 4 LDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
LDLP+ V+ +W SG A+ FGT+ V+RTYSLAN+PGE GN +ML++RLAL + VPVG+GSAFL T GD++ L+GPFGDFH+ + DEIIFIGGGAGIAPIRSMI DQL V+ +++ISFWYGART E + Y ++ +L Y NFSWHVALS + DTWSG RGLIHE VRDQ + SHPD+ C
Sbjct: 386 LDLPEFVRERWHASGTAEHFGTDRTVYRTYSLANSPGELGNDIMLNVRLALARPDTSGVPVGIGSAFLSTLTLGDSITLKGPFGDFHVKDADDEIIFIGGGAGIAPIRSMIQDQLSVRGRTSKISFWYGARTPEDIVYSDEFAQLADTYRNFSWHVALSHLDKDDTWSGERGLIHEFVRDQYLASHPDIGRC 577
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059E3K4_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Hyphomonas atlantica TaxID=1280948 RepID=A0A059E3K4_9PROT) HSP 1 Score: 247 bits (631), Expect = 3.370e-75 Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 1
Query: 4 LDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
L LP VK+QWE SG +TFGT+ V+RTYSLANAPGEFGN+++L+IRLAL K VPVG+GSA+L + GD + LRGPFGDF ++E+A+E++FI GGAGIAPIRSMI+DQL+ K+TS ISFWYG RT +H+ Y+ED + L + NFSWHVA+SD E W+G RG+IHE +RDQ + HPDL +C
Sbjct: 387 LPLPPTVKSQWEASGTDRTFGTDQNVYRTYSLANAPGEFGNEIILNIRLALAKPDKAGVPVGLGSAYLTSLNRGDKVRLRGPFGDFRVDEEAEELVFIAGGAGIAPIRSMIIDQLRRKKTSRPISFWYGVRTPDHVVYKEDFKSLGDLHQNFSWHVAISDLSEHLDWTGHRGMIHETLRDQFLARHPDLGSC 578
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A059FIB4_9PROT (Na(+)-translocating NADH-quinone reductase subunit F n=5 Tax=Hyphomonas TaxID=85 RepID=A0A059FIB4_9PROT) HSP 1 Score: 205 bits (521), Expect = 4.990e-59 Identity = 98/193 (50.78%), Postives = 129/193 (66.84%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGAAKTFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
+++LPD VK+ W SG + + P+ RTYSLANAPGE G++V L +RL L PVG+GSA++ +R+ GDTL LRGP GDFH+ E +E +FIGGGAGIAP+RSMI DQL K +++R+ WYGART E LAY+E+ E+L + NFSW ALS W G +G IHE+ RD + +HPD C
Sbjct: 385 QINLPDSVKSLWRTSGTGERIQSARPLVRTYSLANAPGETGSEVTLIVRLVLAGPEHAGAPVGLGSAYMTSRRPGDTLSLRGPLGDFHVGEHEEERVFIGGGAGIAPLRSMIRDQLLNKGSTSRMWLWYGARTPEALAYREEFEQLATDFDNFSWQAALSHLEPHQEWEGHKGWIHEIFRDNFLATHPDPGRC 577
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: UPI001903BFEC (NADH:ubiquinone reductase (Na(+)-transporting) subunit F n=1 Tax=Rhabdochromatium marinum TaxID=48729 RepID=UPI001903BFEC) HSP 1 Score: 180 bits (456), Expect = 2.990e-51 Identity = 85/194 (43.81%), Postives = 125/194 (64.43%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGAAKTFG-TNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
+ D+PD +A W+R + + P R YS+AN PGE G VML++R+A P +VP G+ S+++ + K+GD + + GPFG+F E E+IF+GGGAG+AP+RS I DQLK + ISFWYGAR++ + YQED ++L A +PNF+W++ALSD D W GP G IH+++ D ++ HP + C
Sbjct: 179 DFDIPDAYRADWDRFDLWRYAAESKEPAMRAYSMANYPGEQGI-VMLNVRIATPPPNKANVPPGIMSSYIFSLKAGDRVMVSGPFGEFFAKETDAEMIFVGGGAGMAPMRSHIFDQLKRLDSKRNISFWYGARSKREIFYQEDFDQLAAEHPNFNWNIALSDPQPEDNWEGPTGFIHQVLFDHYLSQHPAPEDC 371
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: UPI00127D8B23 (NADH:ubiquinone reductase (Na(+)-transporting) subunit F n=1 Tax=Desulfuromonas sp. AOP6 TaxID=1566351 RepID=UPI00127D8B23) HSP 1 Score: 177 bits (449), Expect = 3.430e-50 Identity = 87/194 (44.85%), Postives = 125/194 (64.43%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGAAK-TFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
+ D+ ++ + W+R + T PV R YS+AN PGE G +ML++R+A P DVP G S+++ K GD + + GPFGDF+ + E+IF+GGGAG+AP+RS+I DQL +T +ISFWYGAR+ + L Y ED ++L AAY NF+WHVALSD D W GP G IHE++ ++ + +HP + C
Sbjct: 181 DFDIEERFRGDWDRFDLWQYTSVVKEPVERAYSMANYPGEPGI-IMLNVRVATPPPRHPDVPPGKMSSYIFNLKPGDQVTISGPFGDFYARDTEAEMIFLGGGAGMAPLRSIIFDQLLRVKTKRKISFWYGARSLKELFYDEDFKELAAAYDNFTWHVALSDPLPEDNWEGPTGFIHEVLYERYLKNHPAPEDC 373
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: H8Z131_9GAMM (Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Thiorhodovibrio sp. 970 TaxID=631362 RepID=H8Z131_9GAMM) HSP 1 Score: 175 bits (444), Expect = 1.810e-49 Identity = 84/194 (43.30%), Postives = 122/194 (62.89%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGAAKTFG-TNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
+ D+PD +A W+R + T P R YS+AN PGE G VML++R+A P + P G+ S+++ K GD + + GPFG+F + E+IF+GGGAG+AP+RS I DQLK + +ISFWYGAR++ + YQ+D + L AA+ NFSWH+ALSD D W G G IH+++ D+ ++ HP + C
Sbjct: 179 DFDIPDLFRADWDRFDLWRYVAETKEPTMRAYSMANYPGEQGI-VMLNVRIATPPPNKPNAPPGIMSSYIFGLKPGDRVTVSGPFGEFFAKDTQAEMIFVGGGAGMAPMRSHIFDQLKRLDSQRKISFWYGARSKREIFYQQDFDGLAAAHENFSWHIALSDPQPEDNWQGSTGFIHKVLFDEYLSEHPAPEDC 371
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Match: A0A443ITQ6_9RHOB (Na(+)-translocating NADH-quinone reductase subunit F n=5 Tax=Sinirhodobacter populi TaxID=2306993 RepID=A0A443ITQ6_9RHOB) HSP 1 Score: 172 bits (436), Expect = 2.770e-48 Identity = 84/194 (43.30%), Postives = 124/194 (63.92%), Query Frame = 1
Query: 1 ELDLPDQVKAQWERSGA-AKTFGTNVPVFRTYSLANAPGEFGNKVMLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADEIIFIGGGAGIAPIRSMILDQLKVKRTSARISFWYGARTQEHLAYQEDLEKLVAAYPNFSWHVALSDAPETDTWSGPRGLIHELVRDQCITSHPDLDAC 579
++D+P++ + +W+R G A T + PV R YS+A+ P + G V+L+IRLA P G D P GV S++L + GD++ + GP+GDF + + E+IFIGGG G+AP+R+MI +QL+ T+ +ISFWYGAR++ L Y ++ E L A YPNF W ALS D W G G IH++V + + HP +AC
Sbjct: 179 DMDVPEEFRDEWDRLGLWALTAESGAPVSRAYSVASRPADRGF-VVLNIRLATPPPGAPDAPPGVVSSWLFGLREGDSVEIAGPYGDFRVRDTDREMIFIGGGVGMAPLRAMIHEQLEQVETARKISFWYGARSRAELFYTDEFEALAARYPNFRWMPALSQPARDDDWQGETGFIHDVVFRRYLADHPAPEAC 371 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99552.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99552.2.1 >prot_L-digitata_M_contig99552.2.1 ID=prot_L-digitata_M_contig99552.2.1|Name=mRNA_L-digitata_M_contig99552.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=177bp MLSIRLALPKIGMMDVPVGVGSAFLLTRKSGDTLHLRGPFGDFHINEDADback to top mRNA from alignment at L-digitata_M_contig99552:280..952- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99552.2.1 ID=mRNA_L-digitata_M_contig99552.2.1|Name=mRNA_L-digitata_M_contig99552.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=673bp|location=Sequence derived from alignment at L-digitata_M_contig99552:280..952- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99552:280..952- >mRNA_L-digitata_M_contig99552.2.1 ID=mRNA_L-digitata_M_contig99552.2.1|Name=mRNA_L-digitata_M_contig99552.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=531bp|location=Sequence derived from alignment at L-digitata_M_contig99552:280..952- (Laminaria digitata LdigPH10_18mv male)back to top |