prot_L-digitata_M_contig9955.2.3 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9955.2.3
Unique Nameprot_L-digitata_M_contig9955.2.3
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length567
Homology
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BLAST of mRNA_L-digitata_M_contig9955.2.3 vs. uniprot
Match: A0A6H5KXM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM5_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.210e-39
Identity = 206/238 (86.55%), Postives = 213/238 (89.50%), Query Frame = 0 
Query:  315 RHSVAATPTAAGG--LLSSRKLQRLDRSNKSGAVRSLKGSQACRDAGCHRRPIYAFKGDTKALCCPIHRSKEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMTGQRAMXXXXXXXXXXXXXXXXXXNFEEGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNRREGAA 550
            R  VA   TA GG    S+   QR+DRS ++G   + KG+QACRD GCHRRPIYAFKGDTKALCCPIHRS EMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAM GQRAMXXXXXXXXXXXXXXXXXX FE GCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVN R G+A
Sbjct:  574 RGGVAPNGTAGGGGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSA 811
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BLAST of mRNA_L-digitata_M_contig9955.2.3 vs. uniprot
Match: D8LBV0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.920e-20
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0 
Query:  479 LYAMTGQRAMXXXXXXXXXXXXXXXXXXNFEEGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNRREGAA 550
            LYAM GQRAMXXXXXXXXXXXXXXXXXX FE GCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVN R G+A
Sbjct:   57 LYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSA 128
[Close]
BLAST of mRNA_L-digitata_M_contig9955.2.3 vs. uniprot
Match: D8LBU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU9_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.470e-19
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 
Query:  335 QRLDRSNKSGAVRSLKGSQACRDAGCHRRPIYAFKGDTKALCCPIHRSKEMVNVRHPL 392
            QR+DRS ++G   + KG+QACRD GCHRRPIYAFKGDTKALCCPIHRS EMVNVRHPL
Sbjct:  438 QRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPL 495
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9955.2.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXM5_9PHAE2.210e-3986.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV0_ECTSI1.920e-2091.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LBU9_ECTSI2.470e-1979.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.110coord: 481..550
e-value: 2.8E-7
score: 32.7
coord: 409..473
e-value: 8.4E-11
score: 44.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..233
IPR043822EsV-1-7 cysteine-rich motifPFAMPF19114EsV_1_7_cyscoord: 393..426
e-value: 9.4E-8
score: 32.5
coord: 355..389
e-value: 0.71
score: 10.6
coord: 506..542
e-value: 2.5E-6
score: 27.9
coord: 469..502
e-value: 1.4E-6
score: 28.8
coord: 431..465
e-value: 3.3E-5
score: 24.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9955contigL-digitata_M_contig9955:535..9279 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9955.2.3mRNA_L-digitata_M_contig9955.2.3Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9955 535..9279 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9955.2.3 ID=prot_L-digitata_M_contig9955.2.3|Name=mRNA_L-digitata_M_contig9955.2.3|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=567bp
AAAQRGGGRCNLQLEDAHIPAPYDGSSAEWDPPASTPTPGGGGGGCTTTS
SHQDALTAGRVRGGSGGSGDHVDANLSWRQPCKPLHQHQHHPHRDLPTEI
MTPPWVVPPRVEDAGNSDGTGPGTGGGGIREPRPPSPISALPAVLVESGP
PTVVTAFTHAHVDGSSSSAAAQAAAAAAMDDRGAAACNGLRLVPSFVVSE
DASSRRLSSTSLGRESSFTTTAAAASSPGSPALDSSDHHAMMMNQHHSRG
WGGGHIGDDPAALNAADRVVVLRDGLTPTTTTSRAMVGAKRSWGIDGGPS
SDGVDSGGGRVSVRRHSVAATPTAAGGLLSSRKLQRLDRSNKSGAVRSLK
GSQACRDAGCHRRPIYAFKGDTKALCCPIHRSKEMVNVRHPLCRHESCFR
QPSFGIEGDQRASFCSEHKLPEMINVSSRRCQAAGCLRHPNFGFQGDRRA
TYCCRHKAPGMIDVVSRRCQHPQCVRRPLYAMTGQRAMFCRTHKDAGMTD
VVSRRCNFEEGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNRREGAA
AAASTAAALCFFFGVN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043822EsV_1_7_cys