prot_L-digitata_M_contig99259.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig99259.1.1
Unique Nameprot_L-digitata_M_contig99259.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length262
Homology
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BLAST of mRNA_L-digitata_M_contig99259.1.1 vs. uniprot
Match: A0A3D4Z3V4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D4Z3V4_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-5
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 0 
Query:   45 LQFPPGGRVLTSTDAITVRGALNVAGTVTSVSVNAQPAVSSDGFAHFSAEVPLAPGDNPIEV 106
            L FPP     T+  +I VRG    +  V +V VN   A S DGFAH+ AE+PL PG+NPI V
Sbjct:   58 LVFPPSAHFSTTASSIIVRGKSTDSDGVKAVHVNGIEATSEDGFAHWQAEIPLVPGENPIVV 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99259.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D4Z3V4_9DELT2.270e-548.39Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 41..120
e-value: 1.7E-7
score: 33.4
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 121..261
e-value: 6.7E-7
score: 30.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 138..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99259contigL-digitata_M_contig99259:160..945 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99259.1.1mRNA_L-digitata_M_contig99259.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig99259 160..945 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig99259.1.1 ID=prot_L-digitata_M_contig99259.1.1|Name=mRNA_L-digitata_M_contig99259.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=262bp
MDAGVPVDSGPDAGPDGGFDGGLDAGQVVDGGPMPVDGGFAQVRLQFPPG
GRVLTSTDAITVRGALNVAGTVTSVSVNAQPAVSSDGFAHFSAEVPLAPG
DNPIEVRYVEDGIESVSMAGEVARQDVLLLSPTEVQSAPGQLFVLDNALD
RLLSIDLLTGAARIVSGSGVGSGSSFVGPEGLVLTATSAYVLDRSRDAVM
TVDLATGARAIFSREGTGAGPRFVDPRGIGFDAAGQRLFVVDSNLDALFT
VDIRTGERTIIS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR015943WD40/YVTN_repeat-like_dom_sf