mRNA_L-digitata_M_contig99259.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99259.1.1
Unique NamemRNA_L-digitata_M_contig99259.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99259.1.1 vs. uniprot
Match: A0A3D4Z3V4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D4Z3V4_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-5
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:  133 LQFPPGGRVLTSTDAITVRGALNVAGTVTSVSVNAQPAVSSDGFAHFSAEVPLAPGDNPIEV 318
            L FPP     T+  +I VRG    +  V +V VN   A S DGFAH+ AE+PL PG+NPI V
Sbjct:   58 LVFPPSAHFSTTASSIIVRGKSTDSDGVKAVHVNGIEATSEDGFAHWQAEIPLVPGENPIVV 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D4Z3V4_9DELT2.270e-548.39Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99259contigL-digitata_M_contig99259:160..945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog502025.Hoch_1502
Model size786
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.61e-08
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria,1Q6NR@1224|Proteobacteria,433G0@68525|delta/epsilon subdivisions,2WXM3@28221|Deltaproteobacteria
Descriptionamine dehydrogenase activity
Cds size786
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.709309-CDS-L-digitata_M_contig99259:159..9451682408650.709309-CDS-L-digitata_M_contig99259:159..945Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99259 160..945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99259.1.1prot_L-digitata_M_contig99259.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99259 160..945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99259.1.1

>prot_L-digitata_M_contig99259.1.1 ID=prot_L-digitata_M_contig99259.1.1|Name=mRNA_L-digitata_M_contig99259.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=262bp
MDAGVPVDSGPDAGPDGGFDGGLDAGQVVDGGPMPVDGGFAQVRLQFPPG
GRVLTSTDAITVRGALNVAGTVTSVSVNAQPAVSSDGFAHFSAEVPLAPG
DNPIEVRYVEDGIESVSMAGEVARQDVLLLSPTEVQSAPGQLFVLDNALD
RLLSIDLLTGAARIVSGSGVGSGSSFVGPEGLVLTATSAYVLDRSRDAVM
TVDLATGARAIFSREGTGAGPRFVDPRGIGFDAAGQRLFVVDSNLDALFT
VDIRTGERTIIS
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mRNA from alignment at L-digitata_M_contig99259:160..945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99259.1.1 ID=mRNA_L-digitata_M_contig99259.1.1|Name=mRNA_L-digitata_M_contig99259.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=786bp|location=Sequence derived from alignment at L-digitata_M_contig99259:160..945+ (Laminaria digitata LdigPH10_18mv male)
ATGGATGCCGGTGTGCCCGTTGACAGCGGACCCGATGCCGGACCCGATGG
TGGATTTGATGGAGGCCTAGACGCGGGGCAAGTCGTGGACGGGGGGCCGA
TGCCGGTCGACGGTGGATTTGCGCAGGTTCGCCTGCAGTTTCCGCCCGGC
GGCCGAGTGCTGACCTCCACGGACGCGATCACGGTGCGCGGTGCGCTGAA
CGTGGCCGGCACGGTGACCTCTGTCAGCGTCAATGCACAGCCTGCCGTGT
CCAGCGATGGCTTCGCCCACTTCTCCGCCGAGGTGCCCTTGGCCCCCGGC
GACAATCCCATCGAGGTCCGCTACGTCGAAGACGGCATCGAGTCGGTCTC
CATGGCAGGCGAGGTTGCTCGGCAAGATGTCTTGCTGCTGTCTCCTACGG
AGGTGCAGTCGGCGCCGGGGCAGCTCTTTGTGCTCGATAATGCGCTCGAT
CGATTGCTGTCGATCGACCTGCTCACCGGCGCAGCGCGCATCGTCTCGGG
CAGCGGGGTGGGCTCGGGCTCCAGCTTTGTGGGGCCGGAGGGCCTTGTCC
TGACCGCGACCAGCGCCTACGTGCTCGACCGAAGCCGTGACGCGGTGATG
ACCGTCGATCTCGCGACTGGCGCTCGCGCCATCTTCTCTCGGGAGGGCAC
CGGCGCGGGACCCCGCTTTGTCGACCCGCGGGGCATCGGCTTTGATGCCG
CGGGTCAGCGCCTGTTTGTGGTCGATAGCAACCTCGATGCGCTCTTCACG
GTCGACATCCGCACCGGTGAACGCACCATCATCTCA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99259:160..945+

>mRNA_L-digitata_M_contig99259.1.1 ID=mRNA_L-digitata_M_contig99259.1.1|Name=mRNA_L-digitata_M_contig99259.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=786bp|location=Sequence derived from alignment at L-digitata_M_contig99259:160..945+ (Laminaria digitata LdigPH10_18mv male)
ATGGATGCCGGTGTGCCCGTTGACAGCGGACCCGATGCCGGACCCGATGG
TGGATTTGATGGAGGCCTAGACGCGGGGCAAGTCGTGGACGGGGGGCCGA
TGCCGGTCGACGGTGGATTTGCGCAGGTTCGCCTGCAGTTTCCGCCCGGC
GGCCGAGTGCTGACCTCCACGGACGCGATCACGGTGCGCGGTGCGCTGAA
CGTGGCCGGCACGGTGACCTCTGTCAGCGTCAATGCACAGCCTGCCGTGT
CCAGCGATGGCTTCGCCCACTTCTCCGCCGAGGTGCCCTTGGCCCCCGGC
GACAATCCCATCGAGGTCCGCTACGTCGAAGACGGCATCGAGTCGGTCTC
CATGGCAGGCGAGGTTGCTCGGCAAGATGTCTTGCTGCTGTCTCCTACGG
AGGTGCAGTCGGCGCCGGGGCAGCTCTTTGTGCTCGATAATGCGCTCGAT
CGATTGCTGTCGATCGACCTGCTCACCGGCGCAGCGCGCATCGTCTCGGG
CAGCGGGGTGGGCTCGGGCTCCAGCTTTGTGGGGCCGGAGGGCCTTGTCC
TGACCGCGACCAGCGCCTACGTGCTCGACCGAAGCCGTGACGCGGTGATG
ACCGTCGATCTCGCGACTGGCGCTCGCGCCATCTTCTCTCGGGAGGGCAC
CGGCGCGGGACCCCGCTTTGTCGACCCGCGGGGCATCGGCTTTGATGCCG
CGGGTCAGCGCCTGTTTGTGGTCGATAGCAACCTCGATGCGCTCTTCACG
GTCGACATCCGCACCGGTGAACGCACCATCATCTCA
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