prot_L-digitata_M_contig98167.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig98167.1.1
Unique Nameprot_L-digitata_M_contig98167.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length50
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig98167.1.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0 
Query:    1 SGAGDVDLNQDGFSDLMVGAFVVPGVFVLFGHDDGPKDNSTAVKLAIASG 50
            +GA +VD+N+DG SDL++G F+VPG++V+FG+   P DN+TAV LAI  G
Sbjct:  453 TGAANVDMNRDGVSDLLIGGFLVPGLYVVFGNGGEPYDNTTAVILAIVCG 502
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98167.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G550_ECTSI1.310e-1056.00Integrin alpha chain n=1 Tax=Ectocarpus siliculosu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028994Integrin alpha, N-terminalSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 6..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98167contigL-digitata_M_contig98167:589..738 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98167.1.1mRNA_L-digitata_M_contig98167.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig98167 589..738 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig98167.1.1 ID=prot_L-digitata_M_contig98167.1.1|Name=mRNA_L-digitata_M_contig98167.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
SGAGDVDLNQDGFSDLMVGAFVVPGVFVLFGHDDGPKDNSTAVKLAIASG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028994Integrin_alpha_N