mRNA_L-digitata_M_contig98167.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98167.1.1
Unique NamemRNA_L-digitata_M_contig98167.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig98167.1.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 SGAGDVDLNQDGFSDLMVGAFVVPGVFVLFGHDDGPKDNSTAVKLAIASG 150
            +GA +VD+N+DG SDL++G F+VPG++V+FG+   P DN+TAV LAI  G
Sbjct:  453 TGAANVDMNRDGVSDLLIGGFLVPGLYVVFGNGGEPYDNTTAVILAIVCG 502
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G550_ECTSI1.310e-1056.00Integrin alpha chain n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98167contigL-digitata_M_contig98167:589..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G550
PFAMsFG-GAP,Integrin_alpha2
Model size150
Max annot lvl2759|Eukaryota
KEGG koko:K06484
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04640,ko04810,ko05100,ko05131,ko05133,ko05165,ko05205,ko05206,ko05410,ko05412,ko05414,map04145,map04151,map04510,map04512,map04640,map04810,map05100,map05131,map05133,map05165,map05205,map05206,map05410,map05412,map05414
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.14e-11
EggNOG OGsKOG3637@1|root,KOG3637@2759|Eukaryota
Descriptionintegrin-mediated signaling pathway
Cds size150
COG categoryM
BRITEko00000,ko00001,ko04090,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408638.611102-CDS-L-digitata_M_contig98167:588..7381682408638.611102-CDS-L-digitata_M_contig98167:588..738Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98167 589..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98167.1.1prot_L-digitata_M_contig98167.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98167 589..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98167.1.1

>prot_L-digitata_M_contig98167.1.1 ID=prot_L-digitata_M_contig98167.1.1|Name=mRNA_L-digitata_M_contig98167.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
SGAGDVDLNQDGFSDLMVGAFVVPGVFVLFGHDDGPKDNSTAVKLAIASG
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mRNA from alignment at L-digitata_M_contig98167:589..738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98167.1.1 ID=mRNA_L-digitata_M_contig98167.1.1|Name=mRNA_L-digitata_M_contig98167.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig98167:589..738+ (Laminaria digitata LdigPH10_18mv male)
TCGGGAGCAGGGGACGTGGACCTAAACCAAGATGGGTTTTCCGATCTTAT
GGTGGGGGCGTTCGTCGTGCCGGGGGTGTTCGTCTTGTTTGGCCACGACG
ATGGGCCGAAGGACAACTCTACCGCTGTGAAACTGGCAATCGCGTCGGGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig98167:589..738+

>mRNA_L-digitata_M_contig98167.1.1 ID=mRNA_L-digitata_M_contig98167.1.1|Name=mRNA_L-digitata_M_contig98167.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig98167:589..738+ (Laminaria digitata LdigPH10_18mv male)
TCGGGAGCAGGGGACGTGGACCTAAACCAAGATGGGTTTTCCGATCTTAT
GGTGGGGGCGTTCGTCGTGCCGGGGGTGTTCGTCTTGTTTGGCCACGACG
ATGGGCCGAAGGACAACTCTACCGCTGTGAAACTGGCAATCGCGTCGGGC
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