prot_L-digitata_M_contig102368.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig102368.1.1
Unique Nameprot_L-digitata_M_contig102368.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length56
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig102368.1.1 vs. uniprot
Match: A0A6H5KXS9_9PHAE (HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXS9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.400e-21
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 0 
Query:    4 GSRIVIEGGVEPIEEGIEPGDLVFVLRETRHRTFRRLTEESPHLTADVTV 53
            G+RIV+EGGV+PIEEGI+PGDLVFVLRETRHRTFRRLT +SPHLTAD+TV
Sbjct:  219 GTRIVMEGGVDPIEEGIQPGDLVFVLRETRHRTFRRLTGDSPHLTADITV 268
[Close]
BLAST of mRNA_L-digitata_M_contig102368.1.1 vs. uniprot
Match: A0A8J5XSQ6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSQ6_DIALT)

HSP 1 Score: 47.8 bits (112), Expect = 8.670e-5
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0 
Query:    3 QGSRIVI--EGGVEPIEEGIEPGDLVFVLRETRHRTFRRLTEESPHLTA--DVTVRHA 56
            QG RIV+  EG  EP   G+ PGDLV V+RE  H T+RR   + PHL A  DV++R A
Sbjct:  258 QGERIVLRGEGNAEP---GLRPGDLVLVVRELAHATYRR---QGPHLVAELDVSLREA 309
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102368.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXS9_9PHAE5.400e-2186.00HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A8J5XSQ6_DIALT8.670e-551.72Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102368contigL-digitata_M_contig102368:654..821 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102368.1.1mRNA_L-digitata_M_contig102368.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig102368 654..821 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig102368.1.1 ID=prot_L-digitata_M_contig102368.1.1|Name=mRNA_L-digitata_M_contig102368.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
ARQGSRIVIEGGVEPIEEGIEPGDLVFVLRETRHRTFRRLTEESPHLTAD
VTVRHA
back to top