mRNA_L-digitata_M_contig102368.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102368.1.1
Unique NamemRNA_L-digitata_M_contig102368.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102368.1.1 vs. uniprot
Match: A0A6H5KXS9_9PHAE (HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXS9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.400e-21
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   10 GSRIVIEGGVEPIEEGIEPGDLVFVLRETRHRTFRRLTEESPHLTADVTV 159
            G+RIV+EGGV+PIEEGI+PGDLVFVLRETRHRTFRRLT +SPHLTAD+TV
Sbjct:  219 GTRIVMEGGVDPIEEGIQPGDLVFVLRETRHRTFRRLTGDSPHLTADITV 268
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BLAST of mRNA_L-digitata_M_contig102368.1.1 vs. uniprot
Match: A0A8J5XSQ6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSQ6_DIALT)

HSP 1 Score: 47.8 bits (112), Expect = 8.670e-5
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    7 QGSRIVI--EGGVEPIEEGIEPGDLVFVLRETRHRTFRRLTEESPHLTA--DVTVRHA 168
            QG RIV+  EG  EP   G+ PGDLV V+RE  H T+RR   + PHL A  DV++R A
Sbjct:  258 QGERIVLRGEGNAEP---GLRPGDLVLVVRELAHATYRR---QGPHLVAELDVSLREA 309
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102368.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXS9_9PHAE5.400e-2186.00HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A8J5XSQ6_DIALT8.670e-551.72Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102368contigL-digitata_M_contig102368:654..821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28564.XP_002486980.1
Preferred nameXDJ1
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Model size168
Max annot lvl4751|Fungi
KEGG koko:K09503
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0030150,GO:0030234,GO:0030544,GO:0031072,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032781,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098573,GO:0098588,GO:0098772,GO:0098805,GO:1990542
Exons1
Evalue9.33e-05
EggNOG OGsCOG0484@1|root,KOG0712@2759|Eukaryota,38CPQ@33154|Opisthokonta,3NXND@4751|Fungi,3QMVP@4890|Ascomycota,20E4H@147545|Eurotiomycetes,3S74D@5042|Eurotiales
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-19_004230.1
DescriptionDnaJ domain protein (Mas5)
Cds size168
COG categoryO
BRITEko00000,ko00001,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.666048-CDS-L-digitata_M_contig102368:653..8211682406628.666048-CDS-L-digitata_M_contig102368:653..821Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102368 654..821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102368.1.1prot_L-digitata_M_contig102368.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102368 654..821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102368.1.1

>prot_L-digitata_M_contig102368.1.1 ID=prot_L-digitata_M_contig102368.1.1|Name=mRNA_L-digitata_M_contig102368.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
ARQGSRIVIEGGVEPIEEGIEPGDLVFVLRETRHRTFRRLTEESPHLTAD
VTVRHA
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mRNA from alignment at L-digitata_M_contig102368:654..821-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102368.1.1 ID=mRNA_L-digitata_M_contig102368.1.1|Name=mRNA_L-digitata_M_contig102368.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig102368:654..821- (Laminaria digitata LdigPH10_18mv male)
GCTCGGCAGGGTTCTCGTATTGTTATTGAAGGGGGCGTGGAGCCAATAGA
AGAGGGCATCGAGCCCGGAGATTTAGTTTTTGTGCTGCGGGAAACGAGAC
ATCGCACGTTCCGAAGGCTGACGGAGGAGTCGCCGCACCTCACCGCTGAC
GTCACGGTGAGACATGCA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102368:654..821-

>mRNA_L-digitata_M_contig102368.1.1 ID=mRNA_L-digitata_M_contig102368.1.1|Name=mRNA_L-digitata_M_contig102368.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig102368:654..821- (Laminaria digitata LdigPH10_18mv male)
GCTCGGCAGGGTTCTCGTATTGTTATTGAAGGGGGCGTGGAGCCAATAGA
AGAGGGCATCGAGCCCGGAGATTTAGTTTTTGTGCTGCGGGAAACGAGAC
ATCGCACGTTCCGAAGGCTGACGGAGGAGTCGCCGCACCTCACCGCTGAC
GTCACGGTGAGACATGCA
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