prot_L-digitata_M_contig10223.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig10223.1.1
Unique Nameprot_L-digitata_M_contig10223.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length320
Homology
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BLAST of mRNA_L-digitata_M_contig10223.1.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 7.910e-59
Identity = 141/275 (51.27%), Postives = 159/275 (57.82%), Query Frame = 0 
Query:    1 MAAAGGGVLLFLSGGVAAPSVTASLSAVGYAAANSVSYVAPTLGAWLGYTSTSAXXXXXXXXXXXXXXXXXXXXXXTVGAFSAVSGAXXAGVAGYKMTRRTAGVQEFHFLPLHSKWSLDAPESMFEGASEPGLPVFICIPGWHEPGHDPRHVWGGIGYASAAAAASE---AASGDPSMPHSGSREARVYATDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXARGEAGLEGATTTATGAGTGRWYSGEGAEVG--GAMSRWFSAARGTLVTKEQGG 270
            +AAAGGGVLLFLSGGVAAPSVTASLSAVG+AA NSVSYVAP+LGAWLGYTST+A                      T          XX   AGYKMTRRTAGVQEFHFLPLH++W LD+PESMFEGASEPGLPVFIC+PGWHEPGHDPRH+WGGI YA+ A+ +     AA   P+ P          A +SG                           A  E    G  T A                G  GA+SRWFSAARGT V+++ GG
Sbjct:  490 LAAAGGGVLLFLSGGVAAPSVTASLSAVGFAAVNSVSYVAPSLGAWLGYTSTAAAASGAG----------------TXXXXXXXXXXXXXXXAGYKMTRRTAGVQEFHFLPLHTEWPLDSPESMFEGASEPGLPVFICVPGWHEPGHDPRHIWGGIRYANVASTSETPGTAAENTPACP--APPPGSTAAGNSGALRGRARGETRRGRFGGTPFSPPAAAPAMPEFPGSGCRTAAXXXXXXXXXXXXXXXXGSSGAVSRWFSAARGT-VSRDSGG 745
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BLAST of mRNA_L-digitata_M_contig10223.1.1 vs. uniprot
Match: I2CNY5_NANGC (Transmembrane and coiled-coil domains 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY5_NANGC)

HSP 1 Score: 88.6 bits (218), Expect = 9.400e-16
Identity = 67/179 (37.43%), Postives = 85/179 (47.49%), Query Frame = 0 
Query:    2 AAAGGGVLLFLSGGVAAPSVTASLSAVGYAAANSVSYVAPTLGAWLGYTSTSAXXXXXXXXXXXXXXXXXXXXXXTVGAFSAVSGAXXAGVAGYKMTRRTAGVQEFHFLPLHSKWSLD-------------------------APESMFEGASEPGLPVFICIPGWHEPGHDPRHVWGG 155
            AA GGG L+  +G VAAPS+ ASL A+  A    +   A  +   L  TS++A                       + +F AV+G    G+ GYKMT+RT G+ EFHF+PLHS + L                          A  S F G+  PGLPVFIC+PGW E   DPR VWGG
Sbjct:  272 AALGGGALMLYTGSVAAPSIAASLVALCTAGGMGLGPAAAAITQQL--TSSTATLLSYWGLTSDLC----------ISSFLAVTGV---GLTGYKMTQRTRGLTEFHFVPLHSSFPLHKRDGEAHASKRGTEECQQAPRDDNGAAASSFRGS--PGLPVFICVPGWVEHDQDPRRVWGG 433
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10223.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHC2_9PHAE7.910e-5951.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2CNY5_NANGC9.400e-1637.43Transmembrane and coiled-coil domains 4 n=3 Tax=Mo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007941Protein of unknown function DUF726PFAMPF05277DUF726coord: 55..143
e-value: 5.7E-8
score: 32.1
IPR007941Protein of unknown function DUF726PANTHERPTHR17920TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4coord: 2..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10223contigL-digitata_M_contig10223:3877..9129 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10223.1.1mRNA_L-digitata_M_contig10223.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig10223 3877..9138 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig10223.1.1 ID=prot_L-digitata_M_contig10223.1.1|Name=mRNA_L-digitata_M_contig10223.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=320bp
MAAAGGGVLLFLSGGVAAPSVTASLSAVGYAAANSVSYVAPTLGAWLGYT
STSAAAAAASAAATATAASTSAAGAGTVGAFSAVSGAAGAGVAGYKMTRR
TAGVQEFHFLPLHSKWSLDAPESMFEGASEPGLPVFICIPGWHEPGHDPR
HVWGGIGYASAAAAASEAASGDPSMPHSGSREARVYATDSGGNNGSAAAV
AAVAKEGGGEGGGGKAAAARGEAGLEGATTTATGAGTGRWYSGEGAEVGG
AMSRWFSAARGTLVTKEQGGVSRRSSSSKCSSRSSSSSRSSSSCYKDGGQ
DGRVGAAVGRGGGVSTGGGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007941DUF726