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Homology
BLAST of mRNA_L-digitata_M_contig10223.1.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE) HSP 1 Score: 218 bits (555), Expect = 2.880e-60 Identity = 143/278 (51.44%), Postives = 162/278 (58.27%), Query Frame = 1
Query: 1 QVGMAAAGGGVLLFLSGGVAAPSVTASLSAVGYAAANSVSYVAPTLGAWLGYTSTSAXXXXXXXXXXXXXXXXXXXXXXTVGAFSAVSGAXXAGVAGYKMTRRTAGVQEFHFLPLHSKWSLDAPESMFEGASEPGLPVFICIPGWHEPGHDPRHVWGGIGYASAAAAASE---AASGDPSMPHSGSREARVYATDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXARGEAGLEGATTTATGAGTGRWYSGEGAEVG--GAMSRWFSAARGTLVTKEQGG 819
+VG+AAAGGGVLLFLSGGVAAPSVTASLSAVG+AA NSVSYVAP+LGAWLGYTST+A T XX AGYKMTRRTAGVQEFHFLPLH++W LD+PESMFEGASEPGLPVFIC+PGWHEPGHDPRH+WGGI YA+ A+ + AA P+ P A +SG A E G T A G GA+SRWFSAARGT V+++ GG
Sbjct: 487 KVGLAAAGGGVLLFLSGGVAAPSVTASLSAVGFAAVNSVSYVAPSLGAWLGYTSTAAAASGAG----------------TXXXXXXXXXXXXXXXAGYKMTRRTAGVQEFHFLPLHTEWPLDSPESMFEGASEPGLPVFICVPGWHEPGHDPRHIWGGIRYANVASTSETPGTAAENTPACP--APPPGSTAAGNSGALRGRARGETRRGRFGGTPFSPPAAAPAMPEFPGSGCRTAAXXXXXXXXXXXXXXXXGSSGAVSRWFSAARGT-VSRDSGG 745
BLAST of mRNA_L-digitata_M_contig10223.1.1 vs. uniprot
Match: I2CNY5_NANGC (Transmembrane and coiled-coil domains 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY5_NANGC) HSP 1 Score: 90.1 bits (222), Expect = 3.010e-16 Identity = 68/183 (37.16%), Postives = 87/183 (47.54%), Query Frame = 1
Query: 1 QVGMAAAGGGVLLFLSGGVAAPSVTASLSAVGYAAANSVSYVAPTLGAWLGYTSTSAXXXXXXXXXXXXXXXXXXXXXXTVGAFSAVSGAXXAGVAGYKMTRRTAGVQEFHFLPLHSKWSLD-------------------------APESMFEGASEPGLPVFICIPGWHEPGHDPRHVWGG 474
+V AA GGG L+ +G VAAPS+ ASL A+ A + A + L TS++A + +F AV+G G+ GYKMT+RT G+ EFHF+PLHS + L A S F G+ PGLPVFIC+PGW E DPR VWGG
Sbjct: 268 KVACAALGGGALMLYTGSVAAPSIAASLVALCTAGGMGLGPAAAAITQQL--TSSTATLLSYWGLTSDLC----------ISSFLAVTGV---GLTGYKMTQRTRGLTEFHFVPLHSSFPLHKRDGEAHASKRGTEECQQAPRDDNGAAASSFRGS--PGLPVFICVPGWVEHDQDPRRVWGG 433
BLAST of mRNA_L-digitata_M_contig10223.1.1 vs. uniprot
Match: D7FHT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT7_ECTSI) HSP 1 Score: 55.5 bits (132), Expect = 7.220e-5 Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 1
Query: 1 QVGMAAAGGGVLLFLSGGVAAPSVTASLSAVGY 99
+VG+AAAGGGVLLFLSGGVAAPSVTASLSAVG+
Sbjct: 543 KVGLAAAGGGVLLFLSGGVAAPSVTASLSAVGF 575
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Seed ortholog | 296587.XP_002506286.1 |
| PFAMs | DUF726 |
| Model size | 969 |
| Max annot lvl | 3041|Chlorophyta |
| Hectar predicted targeting category | signal peptide |
| Exons | 7 |
| Evalue | 5.78e-05 |
| EggNOG OGs | KOG2385@1|root,KOG2385@2759|Eukaryota,37RRK@33090|Viridiplantae,34MZR@3041|Chlorophyta |
| Description | Protein of unknown function (DUF726) |
| Cds size | 960 |
| COG category | S |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682406627.5210764-CDS-L-digitata_M_contig10223:3876..4024 | 1682406627.5210764-CDS-L-digitata_M_contig10223:3876..4024 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 3877..4024 - |
| 1682406627.5306695-CDS-L-digitata_M_contig10223:4333..4350 | 1682406627.5306695-CDS-L-digitata_M_contig10223:4333..4350 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 4334..4350 - |
| 1682406627.53946-CDS-L-digitata_M_contig10223:4680..4859 | 1682406627.53946-CDS-L-digitata_M_contig10223:4680..4859 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 4681..4859 - |
| 1682406627.5484707-CDS-L-digitata_M_contig10223:5000..5167 | 1682406627.5484707-CDS-L-digitata_M_contig10223:5000..5167 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 5001..5167 - |
| 1682406627.55861-CDS-L-digitata_M_contig10223:6324..6464 | 1682406627.55861-CDS-L-digitata_M_contig10223:6324..6464 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 6325..6464 - |
| 1682406627.5682697-CDS-L-digitata_M_contig10223:7001..7224 | 1682406627.5682697-CDS-L-digitata_M_contig10223:7001..7224 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 7002..7224 - |
| 1682406627.57654-CDS-L-digitata_M_contig10223:9043..9129 | 1682406627.57654-CDS-L-digitata_M_contig10223:9043..9129 | Laminaria digitata LdigPH10_18mv male | CDS | L-digitata_M_contig10223 9044..9129 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682406627.5845196-UTR-L-digitata_M_contig10223:9129..9138 | 1682406627.5845196-UTR-L-digitata_M_contig10223:9129..9138 | Laminaria digitata LdigPH10_18mv male | UTR | L-digitata_M_contig10223 9130..9138 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10223.1.1 >prot_L-digitata_M_contig10223.1.1 ID=prot_L-digitata_M_contig10223.1.1|Name=mRNA_L-digitata_M_contig10223.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=320bp
MAAAGGGVLLFLSGGVAAPSVTASLSAVGYAAANSVSYVAPTLGAWLGYT STSAAAAAASAAATATAASTSAAGAGTVGAFSAVSGAAGAGVAGYKMTRR TAGVQEFHFLPLHSKWSLDAPESMFEGASEPGLPVFICIPGWHEPGHDPR HVWGGIGYASAAAAASEAASGDPSMPHSGSREARVYATDSGGNNGSAAAV AAVAKEGGGEGGGGKAAAARGEAGLEGATTTATGAGTGRWYSGEGAEVGG AMSRWFSAARGTLVTKEQGGVSRRSSSSKCSSRSSSSSRSSSSCYKDGGQ DGRVGAAVGRGGGVSTGGGR back to topmRNA from alignment at L-digitata_M_contig10223:3877..9138- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-digitata_M_contig10223.1.1 ID=mRNA_L-digitata_M_contig10223.1.1|Name=mRNA_L-digitata_M_contig10223.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5262bp|location=Sequence derived from alignment at L-digitata_M_contig10223:3877..9138- (Laminaria digitata LdigPH10_18mv male) CAGGTCGGAATGGCGGCGGCAGGAGGAGGCGTTCTGCTGTTTCTGAGTGG
AGGGGTCGCGGCGCCGTCTGTGACGGCGTCTCTGTCGGCCGTGGGGTGCG
TGCACAACAGCCAGACATAATACAGTGGGGTACCCCGACTTGTGAGCGTC
CATAATAAGAGAAAACGGACTTAACCCCTTTAGGACAGCACTCCCGTTTT
GGGGACACTCTGACTCTAATTCCAAGTAATTTGTCCCCAAAACGGGAGTG
CGGTCCTAAAGGGGTTAACAGCGGTCAAATCGGCTTGGTCACGGCTTGTG
GCGCCTATACTAAAACCTACATGATGCCCAGTCGGAGATAAGAGCGGCAC
GGAGCTATGATAGAGCGCGGTACAACTGGCCTGTACAGGGGAACTCTTAA
CCCTACTAGCACTTATTAATAGCAAAAAAATGTGCCTATTTGTGGCACAT
AAAAAGTACCTTCTCTTGAGCACTTAGACACGTCAAAGTCAAGTACTACG
GCACAAAATCCGAAAAATGGGACGTATAATAGTACCTGTGTTTAGTATGC
TGCGGCGCACAGCGGCTGTCTCTGCAGCCAGGTAACAGCTTCGGAGTACG
TGTACGACTGGATCTTAGCCAATCATATTTCTTACGATTCGTGACTTCAC
ATTGTTTGTCCGTAGCAGCAGGGTACCTCACTGTATACGCAAACGATGTT
GAATGTTTACACTACCACTCTGGGCGGAAATATAAGGGACGCATAGATAT
TAAAATCAAGATCAAACGGTCCTTATATTTCCGCCCAGAGTGGTACACAG
TATAGACGCGTGCTACGATGGAGAGGTAGCACATTTTGAGAAAAACAAAC
ATTTCTGACTGACGGGGGCTCCTTACCTTAACCCAATATTGTTAGAATGT
TTTTTTCGTATCATCAATACTTTTAGTTTTGAACCTAAGAATCATGGGGA
TTTTTCGTCGGCTTAAGCGTAGTAGTACGCTTTCCCCCCCCCTCCGAAGC
CCGGGTTTGGACGAGTTGTGGAGCTCCCTCCTCGAGTGGGGAAGGAACCT
CAGAAGATGGCAGGTGCGCCCCTGTATTTCATGCCGTACAATGCCTCTAT
ATACTTCCAAGTAGGAGATCGCGGTTTTACCCCTGCCCCTTGATTGACCG
CGCAAACGATGACGTCGATGATGTCGATGGTGTCGATGATGTCGATGATG
TCGATGGATGTCGTTGGTGTCGATGATGTCGATGGTGTCGATGATGTCGA
TGCTGACCAAATACGGATCTTAGAAAAGGGGGGTTGGTTGGAATTCGGGG
ACACGATACAATGAAAAAAAAAAGTAAAAGAAATAAATGAGTTATAGAAA
AGCATAGGTACCTGGTCTATGATGTTAAGGCGGGTTGGTTGTACTTAAAT
CATTTAAATAGTTTCGCAATTCGGGGACGAGATATGCTACAGCAGTACGA
GAGCGCTGTTTGACCCGTTGGTATGATTGACCGCCTCCCTGCACCAACAC
CAGTATAAAAATGGCCAAAAGAACTCCCTGCACTAAAAACTAGTATAAGT
GATTGCAAGGAGGCCTTGGCGTGCCAAAAAAAAAACGTGTTTCCTACAAT
TTAGCATATTTGATGGTGGCGAACGAATGATACCGGCAATCATGTGAGTG
ATGAGGATCAAGCGAAGGATTAAAACGATCAAGTGATTATGACGATCAGG
CGATGATGACGGTCAAACTATGGTGATGATCAAATGATGGTGACAAGCAG
TCAAACAATGATGACGATCAAACGATGATAGCGATCAAACGATGGTGACA
GTCAAGCAACGGTGACGATCAAACGATATTGACGATCAAGCGATTGCGAC
GATGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCCCCC
CCCCCCCATTCCAGGTACGCAGCTGCCAACTCGGTGTCCTATGTCGCACC
GACCTTAGGAGCGTGGTTGGGCTATACGTCTACATCTGCTGCGGCTGCTG
CTGCTTCTGCTGCTGCGACGGCGACGGCTGCGTCGACTAGTGCGGCGGGA
GCCGGGACTGTCGGCGCGTTTAGTGCCGTTTCGGGGGCGGCGGGCGCGGG
TGTCGCCGGTTACAAGATGACAAGAAGGACCGCGGGGGTGAGTTGTTATG
GCCGTTTTGGCTGTCGTTGTGGTTTTTTGGTTGCTTTTGTTTATTTTATT
ATTGTTTTGGTTGTTATTGTGGTTGTTTTGGTTGCTCTTGTTGATTTTTT
TGGTTGTTTTGATTGTGTATGTGCCGTTTCGGGGGCGGCGGGCGCGGGCG
TCGCCGGTTACAACATGACCGGGAGGACCGTGGGGGTGAGGGTACCACTT
ATTCGAGAAATTGTTGACACACTATGTACGGGACAAAGGGCCTAAAACTA
ACCAATGGTTGATTGAAACTGATTTGGTTCGGGTTCGGGTTAGTTATATT
CGTCTTATACGCAGAGTGTGTCAACCATTCTCGAAAATGGTCGACGCACA
CACTATGTACGAGGCATAGGGCCCAACCCCAACCAATGGTTGGTTGAGTC
TGATTGGCTTAGGGTCAGTTGCATTCGTCTCGTTCAGTGTGTCAACAATT
TTCTCGAATATGTGGTAAGCTACCCTCAACACCAACTATCAATTCTGTAT
CCTGCTGTTAATAACCGGGCACAGGTCCAGGAATTTCACTTCCTCCCCCT
GCACTCCAAGTGGTCGCTTGACGCCCCCGAGTCGATGTTCGAAGGGGCCT
CGGAGCCGGGGCTGCCGGTGTTCATCTGCATTCCTGGGTGGCACGAGCCG
GGGCACGATCCAAGGTGAGCGGGGGAGACTGTCCAAAACTTCACACCTCG
AACAGGTCATGATCTAGATTTTCTAGATCCTAGCCTGCCGTGATGAGATG
TTGTGCAGGAACTGTACAGTACAGGTCCAACCCTGGAAGTACGTCATAGA
TCATGCCTATTATACGGCTCCCACCCGGCAACTCGAGCTAGATCATACAG
ATCAGGAAATAGATCTGTCCCGAAAGATCTAGATCATGAGCTGGGAATCG
ATGAGTTGTCCGAGGTCGTGCAATGCCACGTTTCCATTATAGTGTTTGCG
AGCGCTCAAATTGTGTTTTTTTAGTTATTTTAATATTTGGAGCAATTTCT
TTGTTTGGTGCGCTTGCATCTGGGGTGGTATCATACTTGTTTTGTGTTAT
TCCCGTTCGTTTTTGTGTTATGTTTTGCGTGTTTTGAGTGTTTTGGCGCG
TTTTGAGCGTCTGTTTTGCTTGTGTGCGTGTGTTTTTTTTGCGTGTTTTT
TGGGTTTTAGGTTTTAAGGGGAGAAACCATGAACCGGTGGCCGAAAAAAA
AGCGTCGGTGAGAGACTATACCCCGACTGATCTTCGATGCTACACGCCTC
TCTGCTCCCCTCCTTGCGCCCCCTCCCATCCCGCTTGCGGGTCTGCCCGC
CGTCCCCGCCTCTATGCCCCACAAATGCTACGCTACGCTACGCCATGCCA
CGTGTGCTCTCGCTACAAACGCAACTCTGCGCTACGGCATGCCACGCTCG
CGCCAATCAAACGAAAAACGACGACTAAATAATCGATTAAAAACAAATCG
ATTAACAATTCCCTGCTTTTCTGTCTCTCTGTCTCTGTTTCTGTCTGTCT
CTGTCGTTGTCTCTCCGGCATGCCACGCTCGCGCCAATCAAACGAAAAAC
AACGACTAGAAAATCGATTAAAAACAAATCGATTAACAATTCCCTGCTTA
TCTGTCTCTCTGTCTCTGTTTCTGTCTGTCTCTGTCGTTGTCTCTCATCT
CTTGTCTTCATATCTGTTTCTCGCTCTGTCTCTCTCTTTCTCTCTCTGTC
GCTCTCTCTTTCTCTGCCTCTTGTCTCTGCTTCTTGTGTTGGCCTCTGCC
TTTCTGTCTGCCTCTGTCACTGTCTCTCTCTCTCTACCTATCGCCAACTG
TGCTATGAATATGTAATATAGGCACGTCTGGGGAGGCATTGGTTACGCAA
GCGCGGCAGCCGCCGCCTCCGAGGCAGCCTCGGGAGACCCTTCCATGCCG
CATAGCGGCTCAAGAGAAGCCCGCGTCTACGCGACGGACAGCGGCGGTAA
CAACGGTTCGGCAGCAGCAGTGGCAGCGGTAGCGAAGGGTGGAGGGAAGA
CAGCGGCGGTGGCACTCGCAGAGATGGAAGGAAGAGGAGGAGGAGGAGGC
GGAGGAGAGGGAGGAGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGG
AGGTAGAGGGGGAGGAGGAGGAAGAGGAGAGGGAGGAGGTGAGGGAGGGG
GAGGAAAAGCAGCAGCAGCAAGAGGAGAAGCAGGGTTAGAAGGAGCGACG
ACGACAGCAACGGGCGCTGGGACGGGCCGCTGGTATTCCGGAGAAGGGGC
CGAGGTGGGCGGCGCGATGTCTCGCTGGTTCTCCGCCGCGCGCGGGACTC
TCGTGACCGTCTCTGGCGGCGACGGGACTGCCAGCAACGGGACTGTCGGT
ATCGGGACTGCCAGCAACGGGACTGTCGATAACGGGACTGTCTGCGACCG
AACTGTCAGCAGCGGAATTGTCGGGGACGGAACTGCCAGCAACGGAACTG
TCAGCAACGGGACTGTCGACGTTAGCTCCGGGACTGTCCGGCATCAACCA
GCGGGGCTGCCGTCGTCGCAGCCGACCCTGCCGCCGCTCCACCCCCTGCA
AGGTATCAAGAGGCAAGCTATCAATGGAGGACGACCCGGGACGGACCGGC
CTGAAGGATGTTTGGGGAGGAGCCGGGGGAGGGGGCAGAAAGAGCAGGGG
GGAGTGTACGTTGGGGGGGGCGACTTAGGCGAAGGGCGGGACCCGTGCGC
CAGCCGGAGCGGGGGACGCTGGCGGAGCGGCTTGCGGAACGGCGCGCGGA
GCGGCTCGCGGAACGACTCGCGGAACGATTTGCGGAACGGCGCGCGGAAC
GACTCGCGGGACGGGTTGGAAAGCGATGCGATTACGCCGCCGCTGCTGTC
CGCCGCCGCTCCGGCGCCGACTATGGGGTGTTCTTTTGTTGACCTCGGCG
CCGGGATGCAATGTCGCGATAGCAGCAGCAGCCGCAGCAACAGCAGTACT
AATAGCGCACGAAGTAGCCGGAGAAGCAGCAGCAGCAAATGCAGTAGCCG
CAGCAGCAGCAGCAGCCGCAGCAGCAGCAGCTGTTACAAGGACGGGGGGC
AGGATGGGAGGGTAGGCGCAGCGGTTGGGAGAGGGGGCGGGGTTTCCACC
GGGGGTGGCCGT back to topCoding sequence (CDS) from alignment at L-digitata_M_contig10223:3877..9138- >mRNA_L-digitata_M_contig10223.1.1 ID=mRNA_L-digitata_M_contig10223.1.1|Name=mRNA_L-digitata_M_contig10223.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=960bp|location=Sequence derived from alignment at L-digitata_M_contig10223:3877..9138- (Laminaria digitata LdigPH10_18mv male) ATGGCGGCGGCAGGAGGAGGCGTTCTGCTGTTTCTGAGTGGAGGGGTCGC GGCGCCGTCTGTGACGGCGTCTCTGTCGGCCGTGGGGTACGCAGCTGCCA ACTCGGTGTCCTATGTCGCACCGACCTTAGGAGCGTGGTTGGGCTATACG TCTACATCTGCTGCGGCTGCTGCTGCTTCTGCTGCTGCGACGGCGACGGC TGCGTCGACTAGTGCGGCGGGAGCCGGGACTGTCGGCGCGTTTAGTGCCG TTTCGGGGGCGGCGGGCGCGGGTGTCGCCGGTTACAAGATGACAAGAAGG ACCGCGGGGGTCCAGGAATTTCACTTCCTCCCCCTGCACTCCAAGTGGTC GCTTGACGCCCCCGAGTCGATGTTCGAAGGGGCCTCGGAGCCGGGGCTGC CGGTGTTCATCTGCATTCCTGGGTGGCACGAGCCGGGGCACGATCCAAGG CACGTCTGGGGAGGCATTGGTTACGCAAGCGCGGCAGCCGCCGCCTCCGA GGCAGCCTCGGGAGACCCTTCCATGCCGCATAGCGGCTCAAGAGAAGCCC GCGTCTACGCGACGGACAGCGGCGGTAACAACGGTTCGGCAGCAGCAGTG GCAGCGGTAGCGAAGGAGGGAGGAGGTGAGGGAGGGGGAGGAAAAGCAGC AGCAGCAAGAGGAGAAGCAGGGTTAGAAGGAGCGACGACGACAGCAACGG GCGCTGGGACGGGCCGCTGGTATTCCGGAGAAGGGGCCGAGGTGGGCGGC GCGATGTCTCGCTGGTTCTCCGCCGCGCGCGGGACTCTCGTGACCAAAGA GCAGGGGGGAGTTAGCCGGAGAAGCAGCAGCAGCAAATGCAGTAGCCGCA GCAGCAGCAGCAGCCGCAGCAGCAGCAGCTGTTACAAGGACGGGGGGCAG GATGGGAGGGTAGGCGCAGCGGTTGGGAGAGGGGGCGGGGTTTCCACCGG GGGTGGCCGT back to top
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