prot_L-digitata_M_contig1020.4.2 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig1020.4.2
Unique Name	prot_L-digitata_M_contig1020.4.2
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	252

Homology

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 1.090e-141
Identity = 216/256 (84.38%), Postives = 234/256 (91.41%), Query Frame = 0

Query:    1 MSGTRYKDAVKGTDFDDLDEETAQEFEESVRRLTALRENRLEEYLENIGETDLLAQIQATKGEPQTSKDAGLPAPPRKKR--TVEMAQGKWAEILVHTDR---TVKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQREMAGRFA 251
            MSGT Y++AVKGT+FD LD+ET++EFEES RRLTALRENRLEEYLE  GETDLL +++A  GEP+TS+    PAPP+KK+  TVEMAQG+WAEILVHTDR   TVKGGMEIQYRALVTVGNL+GVGGFAIGKA +PA AITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSR PGSGMRAGKLSRDILYNMGITDGACK+IGRRNKYSMIYA FDALAKH+GIESIARGRGKRILSLQREMAGRFA
Sbjct:  115 MSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 2.160e-137
Identity = 210/254 (82.68%), Postives = 228/254 (89.76%), Query Frame = 0

Query:    1 MSGTRYKDAVKGTDFDDLDEETAQEFEESVRRLTALRENRLEEYLENIGETDLLAQIQATKGEPQTSKDAGLPAPPRKKRTVEMAQGKWAEILVHTDR---TVKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQREMAGRFA 251
            MSGT Y++AVKGT+FD LD+ET++EFEES RRLTALRENRLEEYLE  GETDLL +++A  GEP+TS+    PAPP+KK+TVEMAQG+WAEILVHTDR   TVKGGMEIQYRALVTVGNL+GVGGFAIGKA +PA AITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSR       AGKLSRDILYNMGITDGACK+IGRRNKYSMIYA FDALAKH+GIESIARGRGKRILSLQREMAGRFA
Sbjct:   56 MSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 4.700e-68
Identity = 112/122 (91.80%), Postives = 115/122 (94.26%), Query Frame = 0

Query:   84 MAQGKWAEILVHTDR---TVKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGA 202
            MAQG+WAEILVHTDR   TVKGGMEIQYRALVTVGNL+GVGGFAIGKA +PA AITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSR PGSGMRAGKLSRDILYNMGITDGA
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA 122

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 137 bits (344), Expect = 1.930e-34
Identity = 80/167 (47.90%), Postives = 101/167 (60.48%), Query Frame = 0

Query:   83 EMAQGKWAEILVHTDRTVK---GGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQREM 246
            ++A G+W+E+LV  DRT K   GG    YRALV  GNLNG GGF IGK+  P  A+  ASRK K   N+ +V+RY+   L  DL GK N  KVY+  RS   G+R   L R+IL   GIT+   K  G RN Y++  A F AL  H+ IE IA  RGKR++S+ R M
Sbjct:  234 QLAHGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKR--NIFFVDRYQGNGLTSDLAGKQNSCKVYL--RSTDDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: A0A7S3UU99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU99_HETAK)

HSP 1 Score: 129 bits (324), Expect = 1.480e-33
Identity = 73/175 (41.71%), Postives = 108/175 (61.71%), Query Frame = 0

Query:   78 KKRTVEM--AQGKWAEILVHTDRT---VKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQREMA 247
            K++ VE+   +G WA  +V  D T   VKGG     RA+V +GNL G  G+ +GKA    +A+  A R A    NL+YV+R+    L QD  GKHN   V + +  PG+G+ AG L R +L + G+ D + K +GRRN ++++ A F AL +H+G+E+IAR RGKRI+S+++  A
Sbjct:   17 KEQKVEIPGTEGPWAVTIVKEDSTTKVVKGGYLSTNRAVVVIGNLKGAVGYGMGKAAENRDAVDRAIRAASR--NLIYVDRFLDGGLAQDCAGKHNTCLVKLRAVRPGAGLSAGPLIRTVLQSAGVADASGKAVGRRNVFAVLRATFRALERHEGVEAIARKRGKRIVSMEKARA 189

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: A0A4D9DA75_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA75_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.410e-33
Identity = 68/162 (41.98%), Postives = 105/162 (64.81%), Query Frame = 0

Query:   86 QGKWAEILVHTDRT---VKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQR 244
            +GKW ++LV TD T   +KGG  + YRALV VGNL G GG+ +GK  +  EA   A R AK   NL++++ Y+   +  DL GKHN  ++YI +  P    + G++  D+L  MG+  G  + IGRRN YS++ A F A++KH+G+E+++R RG+R++S+ +
Sbjct:  730 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 889

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: W7U5Y7_9STRA (30s ribosomal protein s5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Y7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.460e-33
Identity = 68/162 (41.98%), Postives = 105/162 (64.81%), Query Frame = 0

Query:   86 QGKWAEILVHTDRT---VKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQR 244
            +GKW ++LV TD T   +KGG  + YRALV VGNL G GG+ +GK  +  EA   A R AK   NL++++ Y+   +  DL GKHN  ++YI +  P    + G++  D+L  MG+  G  + IGRRN YS++ A F A++KH+G+E+++R RG+R++S+ +
Sbjct:  751 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 910

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: A0A1E7EQX8_9STRA (30S ribosomal protein S5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQX8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.880e-25
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 0

Query:   92 ILVHTDRTVK---GGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQR 244
            +L+ TDR  K   GG  + +RALV  GN  G GGF +GKA  P +A+  A R AK   N+ +V+R++  ++ +DLVG+ N  KV +  R   +G+R   L  +IL   GIT+   K  G RN Y+++ A F AL  H+ ++ IA  RG R+++L++
Sbjct:    1 MLIRTDRVSKMWRGGRVVSFRALVIGGNTKGCGGFGLGKAFEPEDAVEIACRMAKR--NIFFVDRFRNMTITRDLVGRQNSCKVQL--RVTNNGLRGNPLCCEILKLFGITNVVAKAHGSRNHYNVVRATFKALLTHESLDDIAMKRGIRLVNLEK 152

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.140e-22
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 0

Query:  203 CKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQREMAGRFA 251
            CK+IGRRNKYSMIYA FDALAKH+GIESIARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51

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BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Match: A0A420WMI4_9PROT (30S ribosomal protein S5 n=4 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WMI4_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 2.970e-19
Identity = 59/169 (34.91%), Postives = 92/169 (54.44%), Query Frame = 0

Query:   77 RKKRTVEMAQGKWAEILVHTDR---TVKGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITDGACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSL 242
            R+ +  E    ++ + LVH +R   TVKGG  + + ALV VG+  G  GF  GKA    EAI +A+ +AK    ++ V   +  +L  D+ G+H   K+ + S  PG+G+ AG   R +L  +G+ D   K +G  N Y+M+ A FDAL + +    IA  RGK++  +
Sbjct:    7 RRNKRDEEQDNEFIDRLVHINRVAKTVKGGRNMSFAALVIVGDEKGRVGFGKGKAREVPEAIRKATEEAK--KTMIRVPLREGRTLHHDVRGRHGAGKIVMRSAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRMESPRMIANKRGKKVAEI 173

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot

BLAST of mRNA_L-digitata_M_contig1020.4.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FTY3_ECTSI	1.090e-141	84.38	S5 DRBM domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FTY0_ECTSI	2.160e-137	82.68	S5 DRBM domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A6H5LA05_9PHAE	4.700e-68	91.80	S5 DRBM domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A1Z5K7E2_FISSO	1.930e-34	47.90	Small subunit ribosomal protein S5 n=2 Tax=Fistuli...	[more]
A0A7S3UU99_HETAK	1.480e-33	41.71	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A4D9DA75_9STRA	6.410e-33	41.98	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
W7U5Y7_9STRA	6.460e-33	41.98	30s ribosomal protein s5 n=1 Tax=Nannochloropsis g...	[more]
A0A1E7EQX8_9STRA	4.880e-25	39.10	30S ribosomal protein S5 n=1 Tax=Fragilariopsis cy...	[more]
D7FIU8_ECTSI	5.140e-22	93.88	Ribosomal_S5_C domain-containing protein n=1 Tax=E...	[more]
A0A420WMI4_9PROT	2.970e-19	34.91	30S ribosomal protein S5 n=4 Tax=Robiginitomaculac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 98..152 e-value: 3.1E-14 score: 52.7
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 98..149 score: 11.099668
None	No IPR available	GENE3D	3.30.160.20		coord: 83..146 e-value: 4.6E-10 score: 41.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	PANTHER	PTHR13718:SF61	28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL	coord: 13..240
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 97..154
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 154..243 e-value: 1.2E-18 score: 68.5
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 165..235 e-value: 1.6E-17 score: 62.7
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 13..240
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 158..237

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig1020	contig	L-digitata_M_contig1020:7976..11457 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig1020.4.2	mRNA_L-digitata_M_contig1020.4.2	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig1020 7964..11457 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig1020.4.2 ID=prot_L-digitata_M_contig1020.4.2|Name=mRNA_L-digitata_M_contig1020.4.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=252bp
MSGTRYKDAVKGTDFDDLDEETAQEFEESVRRLTALRENRLEEYLENIGE
TDLLAQIQATKGEPQTSKDAGLPAPPRKKRTVEMAQGKWAEILVHTDRTV
KGGMEIQYRALVTVGNLNGVGGFAIGKAISPAEAITEASRKAKLLPNLVY
VERYKQASLCQDLVGKHNGSKVYIWSRSPGSGMRAGKLSRDILYNMGITD
GACKMIGRRNKYSMIYAFFDALAKHQGIESIARGRGKRILSLQREMAGRF
A*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013810	Ribosomal_S5_N
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR005324	Ribosomal_S5_C
IPR000851	Ribosomal_S5
IPR020568	Ribosomal_S5_D2-typ_fold