prot_L-digitata_M_contig101950.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101950.1.1
Unique Nameprot_L-digitata_M_contig101950.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length81
Homology
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: D8LKY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY3_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.730e-45
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            MSDNEYGDGDGGEEYDVFANEDDDPQ+DEPTPLEADPA+MEVVDA D GGAGLRSAD+RITTKYMTKYERARILGTRALQI
Sbjct:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPTPLEADPADMEVVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQI 81          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-11
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    8 DGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAG-----LRSADERITTKYMTKYERARILGTRALQI 81
            DGD  + YD FA++ D+   +E         ++E+++A + GGA      ++ A ERIT+KYMTKYE+ARILGTRALQI
Sbjct:    4 DGDHADAYDAFADDGDEDMQEEVADEVGQAGQLELMEADETGGAAPGAPPVKPAQERITSKYMTKYEKARILGTRALQI 82          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: UPI0011823F73 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI0011823F73)

HSP 1 Score: 62.0 bits (149), Expect = 2.120e-10
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D EY   D G +YD    EDD   ++E    E D   ++ +  G  GG   +S  +RITTKYMTKYERAR+LGTRALQI
Sbjct:    1 MADEEYEAEDAGGDYDDIVEEDD--NIEETEEQEEDGYNVQCLQPGQAGGGVEKS--KRITTKYMTKYERARVLGTRALQI 77          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: UPI001E2792EC (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2792EC)

HSP 1 Score: 61.6 bits (148), Expect = 2.860e-10
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 0
Query:    1 MSDNEY-GDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D E+ GD D G++Y    +ED+  +M+E    EA+   +EV++ G  GGA  +  ++RIT+KYMTKYERAR+LGTRALQI
Sbjct:    1 MADEEFEGDNDVGDDYPEEVDEDE--EMEE---AEAENGNIEVLNPGQAGGAVPK--EKRITSKYMTKYERARVLGTRALQI 75          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A1B6LZK0_9HEMI (RPB6 homolog n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6LZK0_9HEMI)

HSP 1 Score: 61.2 bits (147), Expect = 4.130e-10
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D+E+   D GE++D     +DD  +DE    E D   +E+++A D+ G   +S   RITTKYMTKYERAR+LGTRALQI
Sbjct:    1 MADDEFEPDDVGEDFDEV---EDDADIDEIDQQEEDGENIELLNAQDVRGGVQKS--NRITTKYMTKYERARVLGTRALQI 76          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A2J7PPI6_9NEOP (RPB6 homolog n=5 Tax=Polyneoptera TaxID=33341 RepID=A0A2J7PPI6_9NEOP)

HSP 1 Score: 60.8 bits (146), Expect = 5.840e-10
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D+E+   DGG++++     D+D  +DE    E +   ++++ AGD  G   +S  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADDEFDGDDGGDDFEEV---DEDENLDELDQQEDEGENIDILAAGDARGGVQKS--KRITTRYMTKYERARVLGTRALQI 76          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A821WDL7_9NEOP (RPB6 homolog n=2 Tax=Pieris TaxID=7115 RepID=A0A821WDL7_9NEOP)

HSP 1 Score: 60.8 bits (146), Expect = 5.960e-10
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D EY   DGG +YD    ED    ++E    E +   ++ V  G  GG   +S  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADEEYDGDDGGGDYDDMVEED--TNIEETEEQEEEGYNVQCVAPGQAGGGVEKS--KRITTRYMTKYERARVLGTRALQI 77          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A7E5W4Q5_TRINI (RPB6 homolog n=32 Tax=Ditrysia TaxID=37567 RepID=A0A7E5W4Q5_TRINI)

HSP 1 Score: 60.8 bits (146), Expect = 5.960e-10
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D EY   D G +YD  A +DD   ++E    E D   ++ +  G  GG   +S  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADEEYEAEDAGADYDDIAEDDD--NIEETEEQEEDGYNVQCLAPGQAGGGVEKS--KRITTRYMTKYERARVLGTRALQI 77          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: V9IC42_APICE (RPB6 homolog n=1 Tax=Apis cerana TaxID=7461 RepID=V9IC42_APICE)

HSP 1 Score: 59.7 bits (143), Expect = 8.230e-10
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D+++   DG E  D F + DDD  + E  P E D   +E++ AG+  G   RS  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADDDF---DGDEVADDFDDVDDDDNI-ELEPQEEDGENIELLAAGEATGGVQRS--KRITTRYMTKYERARVLGTRALQI 75          
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A7M7R6E7_APIME (RPB6 homolog n=10 Tax=Aculeata TaxID=7434 RepID=A0A7M7R6E7_APIME)

HSP 1 Score: 59.7 bits (143), Expect = 1.610e-9
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 81
            M+D+++   DG E  D F + DDD  + E  P E D   +E++ AG+  G   RS  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADDDF---DGDEVADDFDDVDDDDNI-ELEPQEEDGENIELLAAGEATGGVQRS--KRITTRYMTKYERARVLGTRALQI 75          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKY3_ECTSI1.730e-4593.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH45_9STRA1.010e-1146.84DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
UPI0011823F732.120e-1049.38DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001E2792EC2.860e-1050.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1B6LZK0_9HEMI4.130e-1049.38RPB6 homolog n=2 Tax=Cicadellinae TaxID=33370 RepI... [more]
A0A2J7PPI6_9NEOP5.840e-1045.68RPB6 homolog n=5 Tax=Polyneoptera TaxID=33341 RepI... [more]
A0A821WDL7_9NEOP5.960e-1048.15RPB6 homolog n=2 Tax=Pieris TaxID=7115 RepID=A0A82... [more]
A0A7E5W4Q5_TRINI5.960e-1048.15RPB6 homolog n=32 Tax=Ditrysia TaxID=37567 RepID=A... [more]
V9IC42_APICE8.230e-1050.62RPB6 homolog n=1 Tax=Apis cerana TaxID=7461 RepID=... [more]
A0A7M7R6E7_APIME1.610e-950.62RPB6 homolog n=10 Tax=Aculeata TaxID=7434 RepID=A0... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 2..81
e-value: 3.9E-13
score: 51.5
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 12..81
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 59..81
e-value: 2.7E-6
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 66..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101950contigL-digitata_M_contig101950:495..737 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101950.1.1mRNA_L-digitata_M_contig101950.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101950 495..737 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101950.1.1 ID=prot_L-digitata_M_contig101950.1.1|Name=mRNA_L-digitata_M_contig101950.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=81bp
MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGG
AGLRSADERITTKYMTKYERARILGTRALQI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036161RPB6/omega-like_sf
IPR006110Pol_omega/Rpo6/RPB6
IPR020708DNA-dir_RNA_polK_14-18kDa_CS