mRNA_L-digitata_M_contig101950.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101950.1.1
Unique NamemRNA_L-digitata_M_contig101950.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: D8LKY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY3_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.730e-45
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            MSDNEYGDGDGGEEYDVFANEDDDPQ+DEPTPLEADPA+MEVVDA D GGAGLRSAD+RITTKYMTKYERARILGTRALQI
Sbjct:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPTPLEADPADMEVVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQI 81
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BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-11
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   22 DGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAG-----LRSADERITTKYMTKYERARILGTRALQI 243
            DGD  + YD FA++ D+   +E         ++E+++A + GGA      ++ A ERIT+KYMTKYE+ARILGTRALQI
Sbjct:    4 DGDHADAYDAFADDGDEDMQEEVADEVGQAGQLELMEADETGGAAPGAPPVKPAQERITSKYMTKYEKARILGTRALQI 82
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BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: UPI0011823F73 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI0011823F73)

HSP 1 Score: 62.0 bits (149), Expect = 2.120e-10
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D EY   D G +YD    EDD   ++E    E D   ++ +  G  GG   +S  +RITTKYMTKYERAR+LGTRALQI
Sbjct:    1 MADEEYEAEDAGGDYDDIVEEDD--NIEETEEQEEDGYNVQCLQPGQAGGGVEKS--KRITTKYMTKYERARVLGTRALQI 77
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BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: UPI001E2792EC (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2792EC)

HSP 1 Score: 61.6 bits (148), Expect = 2.860e-10
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 MSDNEY-GDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D E+ GD D G++Y    +ED+  +M+E    EA+   +EV++ G  GGA  +  ++RIT+KYMTKYERAR+LGTRALQI
Sbjct:    1 MADEEFEGDNDVGDDYPEEVDEDE--EMEE---AEAENGNIEVLNPGQAGGAVPK--EKRITSKYMTKYERARVLGTRALQI 75
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A1B6LZK0_9HEMI (RPB6 homolog n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6LZK0_9HEMI)

HSP 1 Score: 61.2 bits (147), Expect = 4.130e-10
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D+E+   D GE++D     +DD  +DE    E D   +E+++A D+ G   +S   RITTKYMTKYERAR+LGTRALQI
Sbjct:    1 MADDEFEPDDVGEDFDEV---EDDADIDEIDQQEEDGENIELLNAQDVRGGVQKS--NRITTKYMTKYERARVLGTRALQI 76
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A2J7PPI6_9NEOP (RPB6 homolog n=5 Tax=Polyneoptera TaxID=33341 RepID=A0A2J7PPI6_9NEOP)

HSP 1 Score: 60.8 bits (146), Expect = 5.840e-10
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D+E+   DGG++++     D+D  +DE    E +   ++++ AGD  G   +S  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADDEFDGDDGGDDFEEV---DEDENLDELDQQEDEGENIDILAAGDARGGVQKS--KRITTRYMTKYERARVLGTRALQI 76
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A821WDL7_9NEOP (RPB6 homolog n=2 Tax=Pieris TaxID=7115 RepID=A0A821WDL7_9NEOP)

HSP 1 Score: 60.8 bits (146), Expect = 5.960e-10
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D EY   DGG +YD    ED    ++E    E +   ++ V  G  GG   +S  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADEEYDGDDGGGDYDDMVEED--TNIEETEEQEEEGYNVQCVAPGQAGGGVEKS--KRITTRYMTKYERARVLGTRALQI 77
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A7E5W4Q5_TRINI (RPB6 homolog n=32 Tax=Ditrysia TaxID=37567 RepID=A0A7E5W4Q5_TRINI)

HSP 1 Score: 60.8 bits (146), Expect = 5.960e-10
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D EY   D G +YD  A +DD   ++E    E D   ++ +  G  GG   +S  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADEEYEAEDAGADYDDIAEDDD--NIEETEEQEEDGYNVQCLAPGQAGGGVEKS--KRITTRYMTKYERARVLGTRALQI 77
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: V9IC42_APICE (RPB6 homolog n=1 Tax=Apis cerana TaxID=7461 RepID=V9IC42_APICE)

HSP 1 Score: 59.7 bits (143), Expect = 8.230e-10
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D+++   DG E  D F + DDD  + E  P E D   +E++ AG+  G   RS  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADDDF---DGDEVADDFDDVDDDDNI-ELEPQEEDGENIELLAAGEATGGVQRS--KRITTRYMTKYERARVLGTRALQI 75
[Close]
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Match: A0A7M7R6E7_APIME (RPB6 homolog n=10 Tax=Aculeata TaxID=7434 RepID=A0A7M7R6E7_APIME)

HSP 1 Score: 59.7 bits (143), Expect = 1.610e-9
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGGAGLRSADERITTKYMTKYERARILGTRALQI 243
            M+D+++   DG E  D F + DDD  + E  P E D   +E++ AG+  G   RS  +RITT+YMTKYERAR+LGTRALQI
Sbjct:    1 MADDDF---DGDEVADDFDDVDDDDNI-ELEPQEEDGENIELLAAGEATGGVQRS--KRITTRYMTKYERARVLGTRALQI 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101950.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKY3_ECTSI1.730e-4593.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH45_9STRA1.010e-1146.84DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
UPI0011823F732.120e-1049.38DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001E2792EC2.860e-1050.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1B6LZK0_9HEMI4.130e-1049.38RPB6 homolog n=2 Tax=Cicadellinae TaxID=33370 RepI... [more]
A0A2J7PPI6_9NEOP5.840e-1045.68RPB6 homolog n=5 Tax=Polyneoptera TaxID=33341 RepI... [more]
A0A821WDL7_9NEOP5.960e-1048.15RPB6 homolog n=2 Tax=Pieris TaxID=7115 RepID=A0A82... [more]
A0A7E5W4Q5_TRINI5.960e-1048.15RPB6 homolog n=32 Tax=Ditrysia TaxID=37567 RepID=A... [more]
V9IC42_APICE8.230e-1050.62RPB6 homolog n=1 Tax=Apis cerana TaxID=7461 RepID=... [more]
A0A7M7R6E7_APIME1.610e-950.62RPB6 homolog n=10 Tax=Aculeata TaxID=7434 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101950contigL-digitata_M_contig101950:495..737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7091.BGIBMGA010234-TA
Preferred namePOLR2F
PFAMsRNA_pol_Rpb6
Model size243
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03014
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue4.37e-12
EggNOG OGsCOG1758@1|root,KOG3405@2759|Eukaryota,3A3U5@33154|Opisthokonta,3BPZF@33208|Metazoa,3D6JK@33213|Bilateria,41ZAK@6656|Arthropoda,3SMSU@50557|Insecta,4466F@7088|Lepidoptera
Ec32 ortholog descriptionArchaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
Ec32 orthologEc-11_006010.1
DescriptionRNA polymerase Rpb6
Cds size243
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.5128887-CDS-L-digitata_M_contig101950:494..7371682406624.5128887-CDS-L-digitata_M_contig101950:494..737Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101950 495..737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101950.1.1prot_L-digitata_M_contig101950.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101950 495..737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101950.1.1

>prot_L-digitata_M_contig101950.1.1 ID=prot_L-digitata_M_contig101950.1.1|Name=mRNA_L-digitata_M_contig101950.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=81bp
MSDNEYGDGDGGEEYDVFANEDDDPQMDEPTPLEADPAEMEVVDAGDLGG
AGLRSADERITTKYMTKYERARILGTRALQI
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mRNA from alignment at L-digitata_M_contig101950:495..737-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101950.1.1 ID=mRNA_L-digitata_M_contig101950.1.1|Name=mRNA_L-digitata_M_contig101950.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=243bp|location=Sequence derived from alignment at L-digitata_M_contig101950:495..737- (Laminaria digitata LdigPH10_18mv male)
ATGTCGGACAATGAGTATGGCGATGGTGACGGAGGAGAGGAGTACGACGT
TTTCGCCAACGAGGATGATGACCCGCAGATGGACGAACCCACGCCGCTGG
AGGCTGATCCGGCGGAGATGGAGGTCGTGGATGCAGGCGATTTGGGAGGG
GCAGGGCTAAGAAGCGCCGACGAAAGAATTACAACCAAGTACATGACCAA
GTACGAGCGGGCGAGGATATTGGGAACCCGAGCATTGCAAATA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101950:495..737-

>mRNA_L-digitata_M_contig101950.1.1 ID=mRNA_L-digitata_M_contig101950.1.1|Name=mRNA_L-digitata_M_contig101950.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=243bp|location=Sequence derived from alignment at L-digitata_M_contig101950:495..737- (Laminaria digitata LdigPH10_18mv male)
ATGTCGGACAATGAGTATGGCGATGGTGACGGAGGAGAGGAGTACGACGT
TTTCGCCAACGAGGATGATGACCCGCAGATGGACGAACCCACGCCGCTGG
AGGCTGATCCGGCGGAGATGGAGGTCGTGGATGCAGGCGATTTGGGAGGG
GCAGGGCTAAGAAGCGCCGACGAAAGAATTACAACCAAGTACATGACCAA
GTACGAGCGGGCGAGGATATTGGGAACCCGAGCATTGCAAATA
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