prot_L-digitata_M_contig101360.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101360.1.1
Unique Nameprot_L-digitata_M_contig101360.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length124
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101360.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 30..63
e-value: 3.1
score: 16.8
coord: 64..97
e-value: 1.3
score: 18.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 30..63
score: 8.7324
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 64..97
score: 9.0864
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 21..121
e-value: 2.2E-13
score: 52.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 29..97
NoneNo IPR availablePFAMPF13371TPR_9coord: 41..107
e-value: 1.7E-9
score: 37.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101360contigL-digitata_M_contig101360:11..382 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101360.1.1mRNA_L-digitata_M_contig101360.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101360 11..382 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101360.1.1 ID=prot_L-digitata_M_contig101360.1.1|Name=mRNA_L-digitata_M_contig101360.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
MRRWKLVAILVVANLAPLGTALAAELWPTARAAFEDGRSAYTQRRFVDAL
KAFEASLRLDPTAISLWVNIAEAHRRMGHCETALTKYQRFLDVAPKDEVW
AKVEQRAQRLRKACPQATAAKPTD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf