mRNA_L-digitata_M_contig101360.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101360.1.1
Unique NamemRNA_L-digitata_M_contig101360.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101360.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101360contigL-digitata_M_contig101360:11..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog215803.DB30_6411
PFAMsPEGA,TPR_16
Model size372
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.94e-07
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1PXHP@1224|Proteobacteria,434K6@68525|delta/epsilon subdivisions,2WYXE@28221|Deltaproteobacteria,2Z0V1@29|Myxococcales
DescriptionTPR repeat
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406618.1579103-CDS-L-digitata_M_contig101360:10..3821682406618.1579103-CDS-L-digitata_M_contig101360:10..382Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101360 11..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101360.1.1prot_L-digitata_M_contig101360.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101360 11..382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101360.1.1

>prot_L-digitata_M_contig101360.1.1 ID=prot_L-digitata_M_contig101360.1.1|Name=mRNA_L-digitata_M_contig101360.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
MRRWKLVAILVVANLAPLGTALAAELWPTARAAFEDGRSAYTQRRFVDAL
KAFEASLRLDPTAISLWVNIAEAHRRMGHCETALTKYQRFLDVAPKDEVW
AKVEQRAQRLRKACPQATAAKPTD
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mRNA from alignment at L-digitata_M_contig101360:11..382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101360.1.1 ID=mRNA_L-digitata_M_contig101360.1.1|Name=mRNA_L-digitata_M_contig101360.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig101360:11..382- (Laminaria digitata LdigPH10_18mv male)
ATGCGTCGCTGGAAGCTCGTGGCGATCCTGGTTGTCGCCAACCTCGCGCC
GCTGGGCACAGCGCTCGCCGCCGAACTCTGGCCGACGGCCCGTGCCGCGT
TTGAGGATGGCCGCAGCGCCTACACTCAGCGTCGCTTCGTCGACGCGCTG
AAGGCCTTTGAGGCCTCCCTGCGCCTGGACCCCACCGCGATCAGCCTGTG
GGTGAACATAGCGGAGGCCCACCGCCGCATGGGCCACTGCGAGACCGCGC
TGACGAAGTACCAGCGATTCTTGGACGTCGCCCCCAAGGATGAGGTTTGG
GCCAAGGTCGAGCAGCGCGCGCAGCGCCTGCGAAAGGCCTGCCCCCAAGC
GACCGCAGCCAAGCCCACCGAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101360:11..382-

>mRNA_L-digitata_M_contig101360.1.1 ID=mRNA_L-digitata_M_contig101360.1.1|Name=mRNA_L-digitata_M_contig101360.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig101360:11..382- (Laminaria digitata LdigPH10_18mv male)
ATGCGTCGCTGGAAGCTCGTGGCGATCCTGGTTGTCGCCAACCTCGCGCC
GCTGGGCACAGCGCTCGCCGCCGAACTCTGGCCGACGGCCCGTGCCGCGT
TTGAGGATGGCCGCAGCGCCTACACTCAGCGTCGCTTCGTCGACGCGCTG
AAGGCCTTTGAGGCCTCCCTGCGCCTGGACCCCACCGCGATCAGCCTGTG
GGTGAACATAGCGGAGGCCCACCGCCGCATGGGCCACTGCGAGACCGCGC
TGACGAAGTACCAGCGATTCTTGGACGTCGCCCCCAAGGATGAGGTTTGG
GCCAAGGTCGAGCAGCGCGCGCAGCGCCTGCGAAAGGCCTGCCCCCAAGC
GACCGCAGCCAAGCCCACCGAT
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