prot_L-digitata_M_contig101287.3.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101287.3.1
Unique Nameprot_L-digitata_M_contig101287.3.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length180
Homology
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BLAST of mRNA_L-digitata_M_contig101287.3.1 vs. uniprot
Match: A0A7V6YCM8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V6YCM8_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 4.660e-6
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0 
Query:    2 LAAQAGKTLDGVVLGTASNGLTQVRLGGETLLVRLTPPLPAGQPVQVTIQASGQG 56
            LAA+ G+ +   VLG   +GLT +R+G ETL VRL  PLPAG PV +T++ +  G
Sbjct:   31 LAARRGQIVPATVLGVTPDGLTALRVGSETLFVRLGTPLPAGMPVTLTVRPAPAG 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101287.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V6YCM8_9PROT4.660e-649.09Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101287contigL-digitata_M_contig101287:386..925 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101287.3.1mRNA_L-digitata_M_contig101287.3.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101287 365..925 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101287.3.1 ID=prot_L-digitata_M_contig101287.3.1|Name=mRNA_L-digitata_M_contig101287.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=180bp
MLAAQAGKTLDGVVLGTASNGLTQVRLGGETLLVRLTPPLPAGQPVQVTI
QASGQGVPVLTVQPQVASAQVPLPVMPAPQAPNVPFQPQATVAATKGPVP
TGHPSAQAQLPQPAATPGPASGASGPAARSANTPAPAAAPLGSQPAATPT
TGTPSTPATATAPPPTGSPPPAATLRTATA
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