mRNA_L-digitata_M_contig101287.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101287.3.1
Unique NamemRNA_L-digitata_M_contig101287.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101287.3.1 vs. uniprot
Match: A0A7V6YCM8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V6YCM8_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   10 AALTMLAAQAGKTLDGVVLGTASNGLTQVRLGGETLLVRLTPPLPAGQPVQVTIQASGQG 189
            A+L  LAA+ G+ +   VLG   +GLT +R+G ETL VRL  PLPAG PV +T++ +  G
Sbjct:   26 ASLEALAARRGQIVPATVLGVTPDGLTALRVGSETLFVRLGTPLPAGMPVTLTVRPAPAG 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101287.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V6YCM8_9PROT2.730e-648.33Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101287contigL-digitata_M_contig101287:365..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.7278936-UTR-L-digitata_M_contig101287:364..3851682406616.7278936-UTR-L-digitata_M_contig101287:364..385Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101287 365..385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.7371547-CDS-L-digitata_M_contig101287:385..9251682406616.7371547-CDS-L-digitata_M_contig101287:385..925Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101287 386..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101287.3.1prot_L-digitata_M_contig101287.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101287 386..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101287.3.1

>prot_L-digitata_M_contig101287.3.1 ID=prot_L-digitata_M_contig101287.3.1|Name=mRNA_L-digitata_M_contig101287.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=180bp
MLAAQAGKTLDGVVLGTASNGLTQVRLGGETLLVRLTPPLPAGQPVQVTI
QASGQGVPVLTVQPQVASAQVPLPVMPAPQAPNVPFQPQATVAATKGPVP
TGHPSAQAQLPQPAATPGPASGASGPAARSANTPAPAAAPLGSQPAATPT
TGTPSTPATATAPPPTGSPPPAATLRTATA
back to top

mRNA from alignment at L-digitata_M_contig101287:365..925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101287.3.1 ID=mRNA_L-digitata_M_contig101287.3.1|Name=mRNA_L-digitata_M_contig101287.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=561bp|location=Sequence derived from alignment at L-digitata_M_contig101287:365..925+ (Laminaria digitata LdigPH10_18mv male)
GCCAGCACGGCGGCACTGACGATGCTTGCCGCTCAGGCTGGCAAGACGCT
TGACGGTGTTGTCCTCGGCACCGCGAGTAACGGACTGACCCAAGTGCGGC
TGGGCGGCGAAACACTGCTGGTCCGGCTCACGCCGCCACTGCCCGCCGGC
CAGCCGGTGCAGGTGACCATACAGGCGTCGGGACAGGGTGTGCCGGTGCT
GACGGTGCAACCGCAGGTGGCATCAGCGCAGGTCCCCCTTCCCGTAATGC
CGGCGCCCCAAGCGCCTAACGTCCCCTTTCAGCCGCAGGCCACAGTTGCA
GCGACCAAGGGGCCGGTGCCGACCGGTCACCCTTCGGCACAAGCGCAACT
GCCGCAGCCTGCTGCAACCCCCGGTCCGGCCAGCGGAGCTTCTGGGCCGG
CCGCGCGGTCGGCCAATACCCCTGCACCAGCAGCCGCGCCGCTCGGATCA
CAGCCGGCGGCAACCCCCACGACAGGCACCCCATCCACCCCGGCTACCGC
CACGGCGCCGCCCCCGACCGGCTCACCACCGCCAGCAGCAACGCTCCGCA
CCGCTACCGCG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101287:365..925+

>mRNA_L-digitata_M_contig101287.3.1 ID=mRNA_L-digitata_M_contig101287.3.1|Name=mRNA_L-digitata_M_contig101287.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=540bp|location=Sequence derived from alignment at L-digitata_M_contig101287:365..925+ (Laminaria digitata LdigPH10_18mv male)
ATGCTTGCCGCTCAGGCTGGCAAGACGCTTGACGGTGTTGTCCTCGGCAC
CGCGAGTAACGGACTGACCCAAGTGCGGCTGGGCGGCGAAACACTGCTGG
TCCGGCTCACGCCGCCACTGCCCGCCGGCCAGCCGGTGCAGGTGACCATA
CAGGCGTCGGGACAGGGTGTGCCGGTGCTGACGGTGCAACCGCAGGTGGC
ATCAGCGCAGGTCCCCCTTCCCGTAATGCCGGCGCCCCAAGCGCCTAACG
TCCCCTTTCAGCCGCAGGCCACAGTTGCAGCGACCAAGGGGCCGGTGCCG
ACCGGTCACCCTTCGGCACAAGCGCAACTGCCGCAGCCTGCTGCAACCCC
CGGTCCGGCCAGCGGAGCTTCTGGGCCGGCCGCGCGGTCGGCCAATACCC
CTGCACCAGCAGCCGCGCCGCTCGGATCACAGCCGGCGGCAACCCCCACG
ACAGGCACCCCATCCACCCCGGCTACCGCCACGGCGCCGCCCCCGACCGG
CTCACCACCGCCAGCAGCAACGCTCCGCACCGCTACCGCG
back to top