prot_L-digitata_M_contig101001.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101001.1.1
Unique Nameprot_L-digitata_M_contig101001.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length165
Homology
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E6X2U8_9RHOB (Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E6X2U8_9RHOB)

HSP 1 Score: 328 bits (842), Expect = 1.090e-108
Identity = 162/172 (94.19%), Postives = 164/172 (95.35%), Query Frame = 0
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            MSQVQTLDISPVGRVEGDLDVRVDI+DGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGT VPRNAILARNLGQ+VESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    1 MSQVQTLDISPVGRVEGDLDVRVDIEDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTEVPRNAILARNLGQIVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 172          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E1XGH8_9PROT (Cytochrome-c3 hydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E1XGH8_9PROT)

HSP 1 Score: 317 bits (812), Expect = 3.540e-104
Identity = 155/172 (90.12%), Postives = 163/172 (94.77%), Query Frame = 0
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            MS +QTLDISPVGRVEGDLDVRVDI++GVVTNAWT+AE+FRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTN+NY+ SQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    1 MSAIQTLDISPVGRVEGDLDVRVDIENGVVTNAWTNAEMFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNQNYAGSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSYMV 172          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A6A4TWS6_9RHOB (Nickel-dependent hydrogenase large subunit (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A6A4TWS6_9RHOB)

HSP 1 Score: 304 bits (779), Expect = 5.180e-104
Identity = 148/169 (87.57%), Postives = 157/169 (92.90%), Query Frame = 0
Query:    4 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            V+TLDISPVGRVEGDLDVRV+I+ G VTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VESLQSLPRHHYGLFMID+TN+NY+ S ++ EAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    8 VETLDISPVGRVEGDLDVRVEIEGGKVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESLQSLPRHHYGLFMIDYTNENYAASPFYAEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 176          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A0N0MD33_9HYPH (Cytochrome-c3 hydrogenase n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N0MD33_9HYPH)

HSP 1 Score: 316 bits (809), Expect = 1.120e-103
Identity = 154/172 (89.53%), Postives = 161/172 (93.60%), Query Frame = 0
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            +S V+TLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VESLQSLPRHHYGLFMID+TN NY+ S ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    4 LSSVETLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESLQSLPRHHYGLFMIDYTNANYAASPFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 175          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: UPI0004596740 (nickel-dependent hydrogenase large subunit n=1 Tax=Allgaiera indica TaxID=765699 RepID=UPI0004596740)

HSP 1 Score: 312 bits (799), Expect = 3.400e-102
Identity = 151/169 (89.35%), Postives = 160/169 (94.67%), Query Frame = 0
Query:    4 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            VQTLDISPVGRVEGDLDVRVDI++GVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VES+QSLPRHHYGLFMID+TNKNY+ S ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    6 VQTLDISPVGRVEGDLDVRVDIENGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESIQSLPRHHYGLFMIDYTNKNYAMSPFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSYMV 174          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E3P575_9PROT (Cytochrome-c3 hydrogenase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P575_9PROT)

HSP 1 Score: 311 bits (796), Expect = 9.630e-102
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 0
Query:    4 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            V+TLDISPVGRVEGDLDVRVDI++GVVTNAWT AELFRGFE+ILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VES+QSLPRHHYGLFMIDFTNKNYS SQ+FEEAVKRYSPFTGTSYE GVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    5 VETLDISPVGRVEGDLDVRVDIENGVVTNAWTQAELFRGFEIILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESIQSLPRHHYGLFMIDFTNKNYSGSQFFEEAVKRYSPFTGTSYEQGVTISGRPVEIYALLGGQWPHSSYMV 173          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A1Y6C2X1_9HYPH (Hydrogenase large subunit n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6C2X1_9HYPH)

HSP 1 Score: 309 bits (792), Expect = 3.750e-101
Identity = 149/169 (88.17%), Postives = 159/169 (94.08%), Query Frame = 0
Query:    4 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            VQTLDISPVGRVEGDLDVRVDI++GVVTNAWTHAELFRGFE+IL+DKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQLVES+QSLPRHHYGLFMIDFTNKNY  SQ+FEEA +RY+PFTG+SYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    5 VQTLDISPVGRVEGDLDVRVDIENGVVTNAWTHAELFRGFELILRDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQLVESIQSLPRHHYGLFMIDFTNKNYGHSQFFEEAARRYAPFTGSSYEAGVTISGRPVEIYALLGGQWPHSSYMV 173          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A0T5NWG8_9RHOB (Cytochrome-c3 hydrogenase n=10 Tax=Rhodobacterales TaxID=204455 RepID=A0A0T5NWG8_9RHOB)

HSP 1 Score: 308 bits (790), Expect = 7.710e-101
Identity = 149/169 (88.17%), Postives = 160/169 (94.67%), Query Frame = 0
Query:    4 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            V+TLDISPVGRVEGDLDVRVDI++GVVTNAWTHAE+FRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VESLQSLPRHHYGL+MID+TN+NY+ S ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    5 VETLDISPVGRVEGDLDVRVDIENGVVTNAWTHAEMFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESLQSLPRHHYGLWMIDYTNENYAMSPFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 173          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E1XGU2_9PROT (Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E1XGU2_9PROT)

HSP 1 Score: 308 bits (789), Expect = 1.060e-100
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 0
Query:    1 MSQ--VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            MSQ  VQTLDISPVGRVEGDLDVRVDI++GVV NAWT+AE+FRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAI+ARNLGQ+VESLQSLPRHHYGLFMID TNKNYS SQ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    1 MSQAAVQTLDISPVGRVEGDLDVRVDIENGVVVNAWTNAEMFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAIIARNLGQIVESLQSLPRHHYGLFMIDATNKNYSGSQFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSYMV 174          
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: Q1J422_SPHAL (Nickel-dependent hydrogenase, large subunit n=7 Tax=Sphingomonadaceae TaxID=41297 RepID=Q1J422_SPHAL)

HSP 1 Score: 306 bits (783), Expect = 1.280e-99
Identity = 145/172 (84.30%), Postives = 162/172 (94.19%), Query Frame = 0
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 165
            M+  QTLDISPVGRVEGDLDVRVDI++G+VTNAWT AE+FRGFEVILK+KDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VE++QS+PRHHYGLFMID+TN+NY+KS+++EEAVKRY+PFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:   17 MAATQTLDISPVGRVEGDLDVRVDIENGIVTNAWTQAEMFRGFEVILKNKDPQAGLVVTPRACGICGASHLSCAAWALDTAWGTTVPRNAILARNLGQIVETIQSIPRHHYGLFMIDYTNQNYAKSKFYEEAVKRYAPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 188          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6X2U8_9RHOB1.090e-10894.19Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacte... [more]
A0A2E1XGH8_9PROT3.540e-10490.12Cytochrome-c3 hydrogenase n=3 Tax=Alphaproteobacte... [more]
A0A6A4TWS6_9RHOB5.180e-10487.57Nickel-dependent hydrogenase large subunit (Fragme... [more]
A0A0N0MD33_9HYPH1.120e-10389.53Cytochrome-c3 hydrogenase n=4 Tax=Alphaproteobacte... [more]
UPI00045967403.400e-10289.35nickel-dependent hydrogenase large subunit n=1 Tax... [more]
A0A2E3P575_9PROT9.630e-10289.35Cytochrome-c3 hydrogenase n=2 Tax=Rhodospirillales... [more]
A0A1Y6C2X1_9HYPH3.750e-10188.17Hydrogenase large subunit n=1 Tax=Tistlia consoten... [more]
A0A0T5NWG8_9RHOB7.710e-10188.17Cytochrome-c3 hydrogenase n=10 Tax=Rhodobacterales... [more]
A0A2E1XGU2_9PROT1.060e-10087.93Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacte... [more]
Q1J422_SPHAL1.280e-9984.30Nickel-dependent hydrogenase, large subunit n=7 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001501Nickel-dependent hydrogenase, large subunitPFAMPF00374NiFeSe_Hasescoord: 41..113
e-value: 3.4E-11
score: 42.7
IPR029014[NiFe]-hydrogenase, large subunitGENE3D1.10.645.10coord: 1..165
e-value: 3.7E-42
score: 146.6
IPR029014[NiFe]-hydrogenase, large subunitSUPERFAMILY56762HydB/Nqo4-likecoord: 3..165
NoneNo IPR availablePANTHERPTHR42958HYDROGENASE-2 LARGE CHAINcoord: 6..164
NoneNo IPR availablePANTHERPTHR42958:SF4HYDROGENASE EXPRESSION/FORMATION PROTEIN HUPKcoord: 6..164
IPR018194Nickel-dependent hydrogenase, large subunit, nickel binding sitePROSITEPS00507NI_HGENASE_L_1coord: 41..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101001contigL-digitata_M_contig101001:2..496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101001.1.1mRNA_L-digitata_M_contig101001.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101001 2..496 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101001.1.1 ID=prot_L-digitata_M_contig101001.1.1|Name=mRNA_L-digitata_M_contig101001.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=165bp
MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDK
DPQAGLVVTPRACGICGAWALDTAWGTTVPRNAILARNLGQLVESLQSLP
RHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEI
YALLGGQWPHSSFMV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001501Ni-dep_hyd_lsu
IPR029014NiFe-Hase_large
IPR018194Ni-dep_hyd_lsu_Ni_BS