mRNA_L-digitata_M_contig101001.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101001.1.1
Unique NamemRNA_L-digitata_M_contig101001.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E6X2U8_9RHOB (Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E6X2U8_9RHOB)

HSP 1 Score: 328 bits (842), Expect = 1.090e-108
Identity = 162/172 (94.19%), Postives = 164/172 (95.35%), Query Frame = 1 
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            MSQVQTLDISPVGRVEGDLDVRVDI+DGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGT VPRNAILARNLGQ+VESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    1 MSQVQTLDISPVGRVEGDLDVRVDIEDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTEVPRNAILARNLGQIVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 172
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BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E1XGH8_9PROT (Cytochrome-c3 hydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E1XGH8_9PROT)

HSP 1 Score: 317 bits (812), Expect = 3.540e-104
Identity = 155/172 (90.12%), Postives = 163/172 (94.77%), Query Frame = 1 
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            MS +QTLDISPVGRVEGDLDVRVDI++GVVTNAWT+AE+FRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTN+NY+ SQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    1 MSAIQTLDISPVGRVEGDLDVRVDIENGVVTNAWTNAEMFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNQNYAGSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSYMV 172
[Close]
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A6A4TWS6_9RHOB (Nickel-dependent hydrogenase large subunit (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A6A4TWS6_9RHOB)

HSP 1 Score: 304 bits (779), Expect = 5.180e-104
Identity = 148/169 (87.57%), Postives = 157/169 (92.90%), Query Frame = 1 
Query:   10 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            V+TLDISPVGRVEGDLDVRV+I+ G VTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VESLQSLPRHHYGLFMID+TN+NY+ S ++ EAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    8 VETLDISPVGRVEGDLDVRVEIEGGKVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESLQSLPRHHYGLFMIDYTNENYAASPFYAEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 176
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BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A0N0MD33_9HYPH (Cytochrome-c3 hydrogenase n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N0MD33_9HYPH)

HSP 1 Score: 316 bits (809), Expect = 1.120e-103
Identity = 154/172 (89.53%), Postives = 161/172 (93.60%), Query Frame = 1 
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            +S V+TLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VESLQSLPRHHYGLFMID+TN NY+ S ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    4 LSSVETLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESLQSLPRHHYGLFMIDYTNANYAASPFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 175
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BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: UPI0004596740 (nickel-dependent hydrogenase large subunit n=1 Tax=Allgaiera indica TaxID=765699 RepID=UPI0004596740)

HSP 1 Score: 312 bits (799), Expect = 3.400e-102
Identity = 151/169 (89.35%), Postives = 160/169 (94.67%), Query Frame = 1 
Query:   10 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            VQTLDISPVGRVEGDLDVRVDI++GVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VES+QSLPRHHYGLFMID+TNKNY+ S ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    6 VQTLDISPVGRVEGDLDVRVDIENGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESIQSLPRHHYGLFMIDYTNKNYAMSPFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSYMV 174
[Close]
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E3P575_9PROT (Cytochrome-c3 hydrogenase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P575_9PROT)

HSP 1 Score: 311 bits (796), Expect = 9.630e-102
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 1 
Query:   10 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            V+TLDISPVGRVEGDLDVRVDI++GVVTNAWT AELFRGFE+ILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VES+QSLPRHHYGLFMIDFTNKNYS SQ+FEEAVKRYSPFTGTSYE GVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    5 VETLDISPVGRVEGDLDVRVDIENGVVTNAWTQAELFRGFEIILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESIQSLPRHHYGLFMIDFTNKNYSGSQFFEEAVKRYSPFTGTSYEQGVTISGRPVEIYALLGGQWPHSSYMV 173
[Close]
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A1Y6C2X1_9HYPH (Hydrogenase large subunit n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6C2X1_9HYPH)

HSP 1 Score: 309 bits (792), Expect = 3.750e-101
Identity = 149/169 (88.17%), Postives = 159/169 (94.08%), Query Frame = 1 
Query:   10 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            VQTLDISPVGRVEGDLDVRVDI++GVVTNAWTHAELFRGFE+IL+DKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQLVES+QSLPRHHYGLFMIDFTNKNY  SQ+FEEA +RY+PFTG+SYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    5 VQTLDISPVGRVEGDLDVRVDIENGVVTNAWTHAELFRGFELILRDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQLVESIQSLPRHHYGLFMIDFTNKNYGHSQFFEEAARRYAPFTGSSYEAGVTISGRPVEIYALLGGQWPHSSYMV 173
[Close]
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A0T5NWG8_9RHOB (Cytochrome-c3 hydrogenase n=10 Tax=Rhodobacterales TaxID=204455 RepID=A0A0T5NWG8_9RHOB)

HSP 1 Score: 308 bits (790), Expect = 7.710e-101
Identity = 149/169 (88.17%), Postives = 160/169 (94.67%), Query Frame = 1 
Query:   10 VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            V+TLDISPVGRVEGDLDVRVDI++GVVTNAWTHAE+FRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VESLQSLPRHHYGL+MID+TN+NY+ S ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:    5 VETLDISPVGRVEGDLDVRVDIENGVVTNAWTHAEMFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAILARNLGQIVESLQSLPRHHYGLWMIDYTNENYAMSPFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 173
[Close]
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: A0A2E1XGU2_9PROT (Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E1XGU2_9PROT)

HSP 1 Score: 308 bits (789), Expect = 1.060e-100
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 1 
Query:    1 MSQ--VQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            MSQ  VQTLDISPVGRVEGDLDVRVDI++GVV NAWT+AE+FRGFEVILKDKDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAI+ARNLGQ+VESLQSLPRHHYGLFMID TNKNYS SQ++EEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSS+MV
Sbjct:    1 MSQAAVQTLDISPVGRVEGDLDVRVDIENGVVVNAWTNAEMFRGFEVILKDKDPQAGLVVTPRACGICGASHLTCAAWALDTAWGTTVPRNAIIARNLGQIVESLQSLPRHHYGLFMIDATNKNYSGSQFYEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSYMV 174
[Close]
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Match: Q1J422_SPHAL (Nickel-dependent hydrogenase, large subunit n=7 Tax=Sphingomonadaceae TaxID=41297 RepID=Q1J422_SPHAL)

HSP 1 Score: 306 bits (783), Expect = 1.280e-99
Identity = 145/172 (84.30%), Postives = 162/172 (94.19%), Query Frame = 1 
Query:    1 MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDKDPQAGLVVTPRACGICGA-------WALDTAWGTTVPRNAILARNLGQLVESLQSLPRHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 495
            M+  QTLDISPVGRVEGDLDVRVDI++G+VTNAWT AE+FRGFEVILK+KDPQAGLVVTPRACGICGA       WALDTAWGTTVPRNAILARNLGQ+VE++QS+PRHHYGLFMID+TN+NY+KS+++EEAVKRY+PFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV
Sbjct:   17 MAATQTLDISPVGRVEGDLDVRVDIENGIVTNAWTQAEMFRGFEVILKNKDPQAGLVVTPRACGICGASHLSCAAWALDTAWGTTVPRNAILARNLGQIVETIQSIPRHHYGLFMIDYTNQNYAKSKFYEEAVKRYAPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMV 188
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6X2U8_9RHOB1.090e-10894.19Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacte... [more]
A0A2E1XGH8_9PROT3.540e-10490.12Cytochrome-c3 hydrogenase n=3 Tax=Alphaproteobacte... [more]
A0A6A4TWS6_9RHOB5.180e-10487.57Nickel-dependent hydrogenase large subunit (Fragme... [more]
A0A0N0MD33_9HYPH1.120e-10389.53Cytochrome-c3 hydrogenase n=4 Tax=Alphaproteobacte... [more]
UPI00045967403.400e-10289.35nickel-dependent hydrogenase large subunit n=1 Tax... [more]
A0A2E3P575_9PROT9.630e-10289.35Cytochrome-c3 hydrogenase n=2 Tax=Rhodospirillales... [more]
A0A1Y6C2X1_9HYPH3.750e-10188.17Hydrogenase large subunit n=1 Tax=Tistlia consoten... [more]
A0A0T5NWG8_9RHOB7.710e-10188.17Cytochrome-c3 hydrogenase n=10 Tax=Rhodobacterales... [more]
A0A2E1XGU2_9PROT1.060e-10087.93Cytochrome-c3 hydrogenase n=2 Tax=Alphaproteobacte... [more]
Q1J422_SPHAL1.280e-9984.30Nickel-dependent hydrogenase, large subunit n=7 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101001contigL-digitata_M_contig101001:2..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1417296.U879_13205
PFAMsNiFeSe_Hases
Model size495
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00250
KEGG koko:K06281
KEGG ReactionR08034
KEGG Pathwayko00633,ko01120,map00633,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.58e-103
EggNOG OGsCOG0374@1|root,COG0374@2|Bacteria,1MWFJ@1224|Proteobacteria,2TSPU@28211|Alphaproteobacteria
EC1.12.99.6
DescriptionLarge subunit
Cds size495
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.3413703-CDS-L-digitata_M_contig101001:1..4961682406613.3413703-CDS-L-digitata_M_contig101001:1..496Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101001 2..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101001.1.1prot_L-digitata_M_contig101001.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101001 2..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101001.1.1

>prot_L-digitata_M_contig101001.1.1 ID=prot_L-digitata_M_contig101001.1.1|Name=mRNA_L-digitata_M_contig101001.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=165bp
MSQVQTLDISPVGRVEGDLDVRVDIQDGVVTNAWTHAELFRGFEVILKDK
DPQAGLVVTPRACGICGAWALDTAWGTTVPRNAILARNLGQLVESLQSLP
RHHYGLFMIDFTNKNYSKSQYFEEAVKRYSPFTGTSYEAGVTISGRPVEI
YALLGGQWPHSSFMV
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mRNA from alignment at L-digitata_M_contig101001:2..496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101001.1.1 ID=mRNA_L-digitata_M_contig101001.1.1|Name=mRNA_L-digitata_M_contig101001.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig101001:2..496- (Laminaria digitata LdigPH10_18mv male)
ATGTCACAAGTACAAACACTTGATATTTCCCCCGTCGGCCGCGTTGAAGG
CGATCTAGATGTCCGCGTTGATATCCAAGACGGCGTTGTTACCAATGCTT
GGACACATGCCGAGCTATTCCGCGGTTTCGAAGTTATTTTGAAGGACAAA
GATCCTCAGGCTGGCCTCGTCGTTACGCCGCGTGCCTGCGGTATTTGCGG
AGCGTGGGCGCTTGATACGGCGTGGGGTACGACCGTTCCTCGCAATGCTA
TTTTGGCGCGTAATCTTGGACAGTTGGTGGAGTCACTTCAGTCGTTACCC
CGGCATCACTATGGTCTCTTCATGATCGACTTTACGAACAAGAACTACTC
CAAAAGCCAATATTTTGAAGAAGCTGTGAAGCGGTATTCCCCGTTTACAG
GTACCTCCTATGAGGCGGGCGTTACAATTTCAGGGCGTCCGGTTGAGATT
TATGCATTGCTTGGCGGTCAATGGCCGCATTCATCGTTCATGGTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101001:2..496-

>mRNA_L-digitata_M_contig101001.1.1 ID=mRNA_L-digitata_M_contig101001.1.1|Name=mRNA_L-digitata_M_contig101001.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig101001:2..496- (Laminaria digitata LdigPH10_18mv male)
ATGTCACAAGTACAAACACTTGATATTTCCCCCGTCGGCCGCGTTGAAGG
CGATCTAGATGTCCGCGTTGATATCCAAGACGGCGTTGTTACCAATGCTT
GGACACATGCCGAGCTATTCCGCGGTTTCGAAGTTATTTTGAAGGACAAA
GATCCTCAGGCTGGCCTCGTCGTTACGCCGCGTGCCTGCGGTATTTGCGG
AGCGTGGGCGCTTGATACGGCGTGGGGTACGACCGTTCCTCGCAATGCTA
TTTTGGCGCGTAATCTTGGACAGTTGGTGGAGTCACTTCAGTCGTTACCC
CGGCATCACTATGGTCTCTTCATGATCGACTTTACGAACAAGAACTACTC
CAAAAGCCAATATTTTGAAGAAGCTGTGAAGCGGTATTCCCCGTTTACAG
GTACCTCCTATGAGGCGGGCGTTACAATTTCAGGGCGTCCGGTTGAGATT
TATGCATTGCTTGGCGGTCAATGGCCGCATTCATCGTTCATGGTT
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