prot_L-digitata_M_contig100959.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig100959.1.1
Unique Nameprot_L-digitata_M_contig100959.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length71
Homology
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BLAST of mRNA_L-digitata_M_contig100959.1.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 8.330e-23
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0 
Query:    1 MCWWGESGLVVASRHKHGFILLLYSRKHLSAQALLIPPIKLPVGMRPLFMEV---GGRR 56
            MCWWGES LVVASRHKHGFILLL+SRKHLS+ AL+IPPI+LPVGMRPLFM+    GG R
Sbjct:  787 MCWWGESALVVASRHKHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQAVQEGGSR 845
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100959.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB77_ECTSI8.330e-2379.66SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100959contigL-digitata_M_contig100959:633..845 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100959.1.1mRNA_L-digitata_M_contig100959.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig100959 633..872 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig100959.1.1 ID=prot_L-digitata_M_contig100959.1.1|Name=mRNA_L-digitata_M_contig100959.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
MCWWGESGLVVASRHKHGFILLLYSRKHLSAQALLIPPIKLPVGMRPLFM
EVGGRRNIVVTRLRERGGGGR
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