mRNA_L-digitata_M_contig100959.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100959.1.1
Unique NamemRNA_L-digitata_M_contig100959.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100959.1.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.570e-28
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 QERDVEVAGMCWWGESGLVVASRHKHGFILLLYSRKHLSAQALLIPPIKLPVGMRPLFMEV---GGRR 195
            QER+V+VAGMCWWGES LVVASRHKHGFILLL+SRKHLS+ AL+IPPI+LPVGMRPLFM+    GG R
Sbjct:  778 QEREVQVAGMCWWGESALVVASRHKHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQAVQEGGSR 845
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BLAST of mRNA_L-digitata_M_contig100959.1.1 vs. uniprot
Match: A0A4D9CZK3_9STRA (RIC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.950e-12
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 QERDVEVAGMCWWGESGLVVASR--HKHGFILLLYSRKHLSAQALLIPPIKLPVGMRPLFMEVGGRRNIVVTRLR 219
            QER++EVAGM WWGE  +VV ++   + G  +L+YSR HL   +LL  P+ LP G RPLF+E    R+  V R R
Sbjct:  593 QERELEVAGMTWWGEDAVVVVAKLWSRAGCDILVYSRHHLDNSSLLCDPVPLPPGTRPLFLECVKDRHDTVFRSR 667
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BLAST of mRNA_L-digitata_M_contig100959.1.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.210e-11
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    4 ERDVEVAGMCWWGESGLVVASRHKHGFILLLYSRKHLSAQALLIPPIKLPVGMRPLF 174
            ER++EV G+CWWGE  ++  +R    + L LY R HL   +LL+ P++LPVGM+P F
Sbjct:  435 ERELEVCGLCWWGEEAVIALARQGSMYWLRLYPRTHLDDASLLLAPLRLPVGMKPAF 491
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB77_ECTSI6.570e-2879.41SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CZK3_9STRA5.950e-1248.00RIC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A835YSR2_9STRA7.210e-1147.37RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100959contigL-digitata_M_contig100959:633..872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB77
PFAMsACBP,RIC1
Model size240
Max annot lvl2759|Eukaryota
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.37e-23
EggNOG OGsKOG2006@1|root,KOG2006@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size213
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.7826777-CDS-L-digitata_M_contig100959:632..8451682406612.7826777-CDS-L-digitata_M_contig100959:632..845Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100959 633..845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.7909615-UTR-L-digitata_M_contig100959:845..8721682406612.7909615-UTR-L-digitata_M_contig100959:845..872Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100959 846..872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100959.1.1prot_L-digitata_M_contig100959.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100959 633..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100959.1.1

>prot_L-digitata_M_contig100959.1.1 ID=prot_L-digitata_M_contig100959.1.1|Name=mRNA_L-digitata_M_contig100959.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
MCWWGESGLVVASRHKHGFILLLYSRKHLSAQALLIPPIKLPVGMRPLFM
EVGGRRNIVVTRLRERGGGGR
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mRNA from alignment at L-digitata_M_contig100959:633..872-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100959.1.1 ID=mRNA_L-digitata_M_contig100959.1.1|Name=mRNA_L-digitata_M_contig100959.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=240bp|location=Sequence derived from alignment at L-digitata_M_contig100959:633..872- (Laminaria digitata LdigPH10_18mv male)
CAGGAGCGAGACGTGGAGGTGGCGGGCATGTGCTGGTGGGGTGAGTCGGG
GCTGGTCGTGGCCTCCCGGCACAAGCACGGGTTCATTTTGCTCCTTTACT
CCAGGAAGCATCTCAGCGCGCAGGCACTGCTCATTCCTCCGATAAAGCTC
CCCGTGGGCATGCGACCCCTGTTCATGGAGGTGGGGGGCAGGCGAAATAT
CGTGGTTACGCGATTACGGGAAAGGGGGGGGGGGGGTCGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100959:633..872-

>mRNA_L-digitata_M_contig100959.1.1 ID=mRNA_L-digitata_M_contig100959.1.1|Name=mRNA_L-digitata_M_contig100959.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100959:633..872- (Laminaria digitata LdigPH10_18mv male)
ATGTGCTGGTGGGGTGAGTCGGGGCTGGTCGTGGCCTCCCGGCACAAGCA
CGGGTTCATTTTGCTCCTTTACTCCAGGAAGCATCTCAGCGCGCAGGCAC
TGCTCATTCCTCCGATAAAGCTCCCCGTGGGCATGCGACCCCTGTTCATG
GAGGTGGGGGGCAGGCGAAATATCGTGGTTACGCGATTACGGGAAAGGGG
GGGGGGGGGTCGT
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