prot_L-digitata_M_contig100917.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig100917.1.1
Unique Nameprot_L-digitata_M_contig100917.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length99
Homology
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A3D1R3M8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R3M8_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 6.140e-9
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    2 SMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRL 90
            S+T++++ LVV ELQPL+GA +Q+V +   R V+ +LR PG++  LL+ A T    L +   RP     P   Q LLRA L G+AL R+
Sbjct:   23 SLTSREIALVVDELQPLVGAFVQKVYLPEPRTVIFDLRQPGKSRLLLVCAETGRTRLHISSDRPPSPQTPFAFQGLLRAELTGKALERI 111          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A0K1PFY4_9DELT (Fibronectin/fibrinogen-binding protein n=1 Tax=Vulgatibacter incomptus TaxID=1391653 RepID=A0A0K1PFY4_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 3.420e-7
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 0
Query:    1 MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRL 90
            MS++A +L  VV+ELQP  G  IQ++     R VV ELRVPG T +LL+SA      L  V  RP     P  +Q LLRARL+   L+ +
Sbjct:    1 MSLSASELAAVVAELQPFAGGTIQKIWAATPRTVVFELRVPGETHQLLVSADPDETRLHGVLDRPPSPASPLPIQNLLRARLLPSRLVAI 90          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: UPI001F5AC190 (NFACT RNA binding domain-containing protein n=1 Tax=Anaeromyxobacter sp. SG63 TaxID=2925408 RepID=UPI001F5AC190)

HSP 1 Score: 54.7 bits (130), Expect = 1.630e-6
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 0
Query:    1 MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQAL 87
            MS+TA+++ LVV EL PL GAR+ +V V AER + LEL       RLLLSA   L  L +  +RP       Q+QALLR  L G  L
Sbjct:    1 MSLTAREIALVVEELAPLCGARVDQVRVHAERALTLELFGAAGEARLLLSAEPNLTRLHVSARRPPAPEVAFQLQALLRKELEGARL 87          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3D1R3M8_9DELT6.140e-942.70Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A0K1PFY4_9DELT3.420e-744.44Fibronectin/fibrinogen-binding protein n=1 Tax=Vul... [more]
UPI001F5AC1901.630e-647.13NFACT RNA binding domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05833NFACT_Ncoord: 8..92
e-value: 2.9E-10
score: 39.5
NoneNo IPR availableGENE3D2.30.310.10ibrinogen binding protein from staphylococcus aureus domaincoord: 1..97
e-value: 1.0E-11
score: 47.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100917contigL-digitata_M_contig100917:400..696 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100917.1.1mRNA_L-digitata_M_contig100917.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig100917 391..696 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig100917.1.1 ID=prot_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=99bp
MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLS
ARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEGRTVEL
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