mRNA_L-digitata_M_contig100917.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100917.1.1
Unique NamemRNA_L-digitata_M_contig100917.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A3D1R3M8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R3M8_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 1.230e-9
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   13 SMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRL 279
            S+T++++ LVV ELQPL+GA +Q+V +   R V+ +LR PG++  LL+ A T    L +   RP     P   Q LLRA L G+AL R+
Sbjct:   23 SLTSREIALVVDELQPLVGAFVQKVYLPEPRTVIFDLRQPGKSRLLLVCAETGRTRLHISSDRPPSPQTPFAFQGLLRAELTGKALERI 111          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A0K1PFY4_9DELT (Fibronectin/fibrinogen-binding protein n=1 Tax=Vulgatibacter incomptus TaxID=1391653 RepID=A0A0K1PFY4_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 8.010e-8
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   10 MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRL 279
            MS++A +L  VV+ELQP  G  IQ++     R VV ELRVPG T +LL+SA      L  V  RP     P  +Q LLRARL+   L+ +
Sbjct:    1 MSLSASELAAVVAELQPFAGGTIQKIWAATPRTVVFELRVPGETHQLLVSADPDETRLHGVLDRPPSPASPLPIQNLLRARLLPSRLVAI 90          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: UPI001F5AC190 (NFACT RNA binding domain-containing protein n=1 Tax=Anaeromyxobacter sp. SG63 TaxID=2925408 RepID=UPI001F5AC190)

HSP 1 Score: 56.6 bits (135), Expect = 3.810e-7
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   10 MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQAL 270
            MS+TA+++ LVV EL PL GAR+ +V V AER + LEL       RLLLSA   L  L +  +RP       Q+QALLR  L G  L
Sbjct:    1 MSLTAREIALVVEELAPLCGARVDQVRVHAERALTLELFGAAGEARLLLSAEPNLTRLHVSARRPPAPEVAFQLQALLRKELEGARL 87          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A1W9J774_9BACT (NFACT-R_1 domain-containing protein n=1 Tax=Nitrospira sp. ST-bin5 TaxID=1978765 RepID=A0A1W9J774_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query:    1 RFAMSMTAQQLELVVSELQP-LIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEGR 294
            R  M++T  ++ LVV EL P LIG  +Q+      R +VLE+R PG T RLLLSA      + L+ +  +    P      LRA L G  +  LR EGR
Sbjct:    8 RQTMALTTTEITLVVGELAPALIGGWVQKAYQPTPRTIVLEIRTPGHTHRLLLSAHPTSTRIHLITRALQNPPTPPAFCQYLRAHLHGARIDDLRQEGR 106          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A849RVM9_9BACT (Fibronectin-binding domain-containing protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A849RVM9_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 5.550e-5
Identity = 39/95 (41.05%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   10 MSMTAQQLELVVSELQP-LIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEG 291
            M++TA ++ LVV+EL P L+G  IQ+      R VVLE+R PG T RLL+SA      L L  +  +    P      LRA L G  +  LR EG
Sbjct:    1 MALTATEITLVVAELAPALMGGWIQKAYQPTSRTVVLEIRTPGHTHRLLISAHPASTRLHLASRALQNPPTPPAFCQYLRAHLHGARIDDLRQEG 95          
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A330L952_9BACT (NFACT-R_1 domain-containing protein n=3 Tax=Nitrospira TaxID=1234 RepID=A0A330L952_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 7.590e-5
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   10 MSMTAQQLELVVSELQP-LIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEGR 294
            M++TA ++  VV+E+ P LIG  IQ+      R VVLE+R PG T RLLLSA      L LV    +    P      LRA L G  +  LR EGR
Sbjct:    1 MALTATEISQVVAEVAPALIGGWIQKAYQPTARTVVLEIRTPGHTHRLLLSAHPASTRLHLVTHALQNPPAPPAFCQYLRAHLHGARVDDLRQEGR 96          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3D1R3M8_9DELT1.230e-942.70Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A0K1PFY4_9DELT8.010e-844.44Fibronectin/fibrinogen-binding protein n=1 Tax=Vul... [more]
UPI001F5AC1903.810e-747.13NFACT RNA binding domain-containing protein n=1 Ta... [more]
A0A1W9J774_9BACT2.190e-539.39NFACT-R_1 domain-containing protein n=1 Tax=Nitros... [more]
A0A849RVM9_9BACT5.550e-541.05Fibronectin-binding domain-containing protein n=1 ... [more]
A0A330L952_9BACT7.590e-542.71NFACT-R_1 domain-containing protein n=3 Tax=Nitros... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100917contigL-digitata_M_contig100917:391..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog290397.Adeh_0162
PFAMsDUF814,FbpA
Model size306
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000187
EggNOG OGsCOG1293@1|root,COG1293@2|Bacteria,1P028@1224|Proteobacteria,42MKF@68525|delta/epsilon subdivisions,2WM6D@28221|Deltaproteobacteria
DescriptionDomain of unknown function (DUF814)
Cds size297
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.3758068-UTR-L-digitata_M_contig100917:390..3991682406612.3758068-UTR-L-digitata_M_contig100917:390..399Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100917 391..399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.3883657-CDS-L-digitata_M_contig100917:399..6961682406612.3883657-CDS-L-digitata_M_contig100917:399..696Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100917 400..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100917.1.1prot_L-digitata_M_contig100917.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100917 400..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100917.1.1

>prot_L-digitata_M_contig100917.1.1 ID=prot_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=99bp
MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLS
ARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEGRTVEL
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mRNA from alignment at L-digitata_M_contig100917:391..696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100917.1.1 ID=mRNA_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig100917:391..696+ (Laminaria digitata LdigPH10_18mv male)
AGGTTCGCCATGAGCATGACCGCGCAGCAGTTGGAGCTGGTCGTTTCAGA GCTACAGCCCCTGATCGGAGCGCGCATTCAGCGCGTCGATGTCGTCGCCG AACGGGAGGTTGTCTTGGAGCTGAGGGTGCCCGGTCGCACCCTTCGCTTG CTGTTGTCGGCGCGCACCCAACTCGGGGCCCTGTGCCTGGTTGATAAGCG CCCACGTCGGCTAGTGCCGCCGGGGCAAATGCAAGCTCTGTTGCGCGCCC GCCTGATTGGTCAGGCCTTGATTCGACTTCGTGTTGAGGGCCGCACCGTC GAGCTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100917:391..696+

>mRNA_L-digitata_M_contig100917.1.1 ID=mRNA_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=297bp|location=Sequence derived from alignment at L-digitata_M_contig100917:391..696+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCATGACCGCGCAGCAGTTGGAGCTGGTCGTTTCAGAGCTACAGCC
CCTGATCGGAGCGCGCATTCAGCGCGTCGATGTCGTCGCCGAACGGGAGG
TTGTCTTGGAGCTGAGGGTGCCCGGTCGCACCCTTCGCTTGCTGTTGTCG
GCGCGCACCCAACTCGGGGCCCTGTGCCTGGTTGATAAGCGCCCACGTCG
GCTAGTGCCGCCGGGGCAAATGCAAGCTCTGTTGCGCGCCCGCCTGATTG
GTCAGGCCTTGATTCGACTTCGTGTTGAGGGCCGCACCGTCGAGCTG
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