mRNA_L-digitata_M_contig100917.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A3D1R3M8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R3M8_9DELT) HSP 1 Score: 61.2 bits (147), Expect = 1.230e-9 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 13 SMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRL 279
S+T++++ LVV ELQPL+GA +Q+V + R V+ +LR PG++ LL+ A T L + RP P Q LLRA L G+AL R+
Sbjct: 23 SLTSREIALVVDELQPLVGAFVQKVYLPEPRTVIFDLRQPGKSRLLLVCAETGRTRLHISSDRPPSPQTPFAFQGLLRAELTGKALERI 111
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A0K1PFY4_9DELT (Fibronectin/fibrinogen-binding protein n=1 Tax=Vulgatibacter incomptus TaxID=1391653 RepID=A0A0K1PFY4_9DELT) HSP 1 Score: 58.5 bits (140), Expect = 8.010e-8 Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 10 MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRL 279
MS++A +L VV+ELQP G IQ++ R VV ELRVPG T +LL+SA L V RP P +Q LLRARL+ L+ +
Sbjct: 1 MSLSASELAAVVAELQPFAGGTIQKIWAATPRTVVFELRVPGETHQLLVSADPDETRLHGVLDRPPSPASPLPIQNLLRARLLPSRLVAI 90
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: UPI001F5AC190 (NFACT RNA binding domain-containing protein n=1 Tax=Anaeromyxobacter sp. SG63 TaxID=2925408 RepID=UPI001F5AC190) HSP 1 Score: 56.6 bits (135), Expect = 3.810e-7 Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 10 MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQAL 270
MS+TA+++ LVV EL PL GAR+ +V V AER + LEL RLLLSA L L + +RP Q+QALLR L G L
Sbjct: 1 MSLTAREIALVVEELAPLCGARVDQVRVHAERALTLELFGAAGEARLLLSAEPNLTRLHVSARRPPAPEVAFQLQALLRKELEGARL 87
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A1W9J774_9BACT (NFACT-R_1 domain-containing protein n=1 Tax=Nitrospira sp. ST-bin5 TaxID=1978765 RepID=A0A1W9J774_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5 Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 1 RFAMSMTAQQLELVVSELQP-LIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEGR 294
R M++T ++ LVV EL P LIG +Q+ R +VLE+R PG T RLLLSA + L+ + + P LRA L G + LR EGR
Sbjct: 8 RQTMALTTTEITLVVGELAPALIGGWVQKAYQPTPRTIVLEIRTPGHTHRLLLSAHPTSTRIHLITRALQNPPTPPAFCQYLRAHLHGARIDDLRQEGR 106
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A849RVM9_9BACT (Fibronectin-binding domain-containing protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A849RVM9_9BACT) HSP 1 Score: 50.4 bits (119), Expect = 5.550e-5 Identity = 39/95 (41.05%), Postives = 51/95 (53.68%), Query Frame = 1
Query: 10 MSMTAQQLELVVSELQP-LIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEG 291
M++TA ++ LVV+EL P L+G IQ+ R VVLE+R PG T RLL+SA L L + + P LRA L G + LR EG
Sbjct: 1 MALTATEITLVVAELAPALMGGWIQKAYQPTSRTVVLEIRTPGHTHRLLISAHPASTRLHLASRALQNPPTPPAFCQYLRAHLHGARIDDLRQEG 95
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Match: A0A330L952_9BACT (NFACT-R_1 domain-containing protein n=3 Tax=Nitrospira TaxID=1234 RepID=A0A330L952_9BACT) HSP 1 Score: 50.1 bits (118), Expect = 7.590e-5 Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 10 MSMTAQQLELVVSELQP-LIGARIQRVDVVAEREVVLELRVPGRTLRLLLSARTQLGALCLVDKRPRRLVPPGQMQALLRARLIGQALIRLRVEGR 294
M++TA ++ VV+E+ P LIG IQ+ R VVLE+R PG T RLLLSA L LV + P LRA L G + LR EGR
Sbjct: 1 MALTATEISQVVAEVAPALIGGWIQKAYQPTARTVVLEIRTPGHTHRLLLSAHPASTRLHLVTHALQNPPAPPAFCQYLRAHLHGARVDDLRQEGR 96 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100917.1.1 >prot_L-digitata_M_contig100917.1.1 ID=prot_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=99bp MSMTAQQLELVVSELQPLIGARIQRVDVVAEREVVLELRVPGRTLRLLLSback to top mRNA from alignment at L-digitata_M_contig100917:391..696+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100917.1.1 ID=mRNA_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig100917:391..696+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100917:391..696+ >mRNA_L-digitata_M_contig100917.1.1 ID=mRNA_L-digitata_M_contig100917.1.1|Name=mRNA_L-digitata_M_contig100917.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=297bp|location=Sequence derived from alignment at L-digitata_M_contig100917:391..696+ (Laminaria digitata LdigPH10_18mv male)back to top |