prot_L-digitata_M_contig100850.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig100850.1.1
Unique Name	prot_L-digitata_M_contig100850.1.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	117

Homology

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KN68_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN68_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.370e-14
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE 116
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF   +E
Sbjct:  339 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTFTPAKE 414

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JC48_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC48_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.150e-14
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  ED++V LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  109 AFATLLANREDVDVTLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 179

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KGX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.700e-14
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE+ GLL+A TF
Sbjct:  396 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQRELYGLLEAGTF 466

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5J9U0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.830e-14
Identity = 45/100 (45.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query:   13 REEKGLQPGESEQALSHY-LGSLSMMDRTAFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            RE  G   GE   AL+    G+       AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  413 REPGGTGAGEQAGALAAVDPGAAGAGFPLAFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 512

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5L749_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L749_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  480 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 550

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KK00_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK00_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.580e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  351 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 421

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JE41_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE41_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.600e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  514 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 584

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JSQ4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.620e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  463 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 533

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5L6Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.640e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  473 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 543

[Close]

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JQ01_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ01_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   41 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 111
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  979 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 1049

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KN68_9PHAE	3.370e-14	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JC48_9PHAE	6.150e-14	52.11	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KGX4_9PHAE	8.700e-14	52.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9U0_9PHAE	8.830e-14	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L749_9PHAE	1.560e-13	52.11	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KK00_9PHAE	1.580e-13	52.11	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JE41_9PHAE	1.600e-13	52.11	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JSQ4_9PHAE	1.620e-13	52.11	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L6Y3_9PHAE	1.640e-13	52.11	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JQ01_9PHAE	1.660e-13	52.11	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..83

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100850	contig	L-digitata_M_contig100850:471..821 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100850.1.1	mRNA_L-digitata_M_contig100850.1.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig100850 385..935 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig100850.1.1 ID=prot_L-digitata_M_contig100850.1.1|Name=mRNA_L-digitata_M_contig100850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=117bp
MPGRTRGQSRAIREEKGLQPGESEQALSHYLGSLSMMDRTAFVSMMAEHE
DIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSR
EILGLLDADTFAAVQE*