mRNA_L-digitata_M_contig100850.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100850.1.1
Unique NamemRNA_L-digitata_M_contig100850.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KIP2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.990e-24
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDSKWVFDLKKDELGHIVKFKARLVARGFKQR 551
            AFV+++A  EDI+  LRD RPP   P+L   QASD+  P SY  AMASG   +  DSM RE  GLL+A T    ++ Q V+N I+ KWVFD K DE G   K K+RLVARG  QR
Sbjct:  585 AFVTLLANREDIDATLRDQRPPEQRPDLRHCQASDLHVPMSYKEAMASGHRHLRSDSMQREFYGLLEAGTCTPAKQ-QLVENAINDKWVFDWKADEFGWPTKVKSRLVARGDMQR 698
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KK77_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK77_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.930e-23
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDSKWVFDLKKDELGHIVKFKARLVARG 539
            A  +++A  EDI+  LRD RPP   P+L   Q SD++ P SY  AM S    +W D+M RE  GLL+A TF   +  QSV N I++KWVFD K DE G   K KARLVARG
Sbjct:  676 ACATLLANREDIDAMLRDQRPPEQRPDLPHCQTSDLRIPKSYKEAMTSEYRHLWSDAMKREFFGLLEAGTFTPAKY-QSVQNAINAKWVFDRKADEFGWATKVKARLVARG 785
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KA04_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA04_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.540e-18
Identity = 53/115 (46.09%), Postives = 65/115 (56.52%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDSKWVFDLKKDELGHIVKFKARLVARGFKQR 551
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM R                 Q V+N I++KWVFD K DE G   K K+RLVARG  QR
Sbjct:  824 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQRG----------------QLVENAINAKWVFDWKADEFGWPTKVKSRLVARGDMQR 922
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.550e-18
Identity = 54/115 (46.96%), Postives = 65/115 (56.52%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDSKWVFDLKKDELGHIVKFKARLVARGFKQR 551
            A  +++A  EDI+  LRD RPP   P+L   QASD++ P SY GAMAS    +W DSM RE  GL                N I++KWVF+ K DE G   K KARLVARG  QR
Sbjct:  557 ACATLLANREDIDAMLRDQRPPEQRPDLPHCQASDLRIPKSYNGAMASEYRHLWDDSMKREYFGLX-------------FWNAINAKWVFNWKADEFGWATKVKARLVARGDMQR 658
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KUX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.240e-18
Identity = 53/115 (46.09%), Postives = 64/115 (55.65%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDSKWVFDLKKDELGHIVKFKARLVARGFKQR 551
            AFV+++A  EDI+  LRD RPP    +L   QASD+  P SY  AMAS    +W DSM RE+                 V+N I+ KWVFD K DE G   K K+RLVARG  QR
Sbjct:  131 AFVTLLANREDIDATLRDQRPPEQRHDLPHCQASDLCVPKSYKEAMASEHRHLWSDSMQREL-----------------VENAINDKWVFDWKADEFGWPTKVKSRLVARGDMQR 228
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-14
Identity = 57/144 (39.58%), Postives = 72/144 (50.00%), Query Frame = 3 
Query:  123 REEKGLQPGESEQALSHY-LGSLSMMDRTAFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDSKWVFDLKKDELGHIVKFKARLVARGFKQR 551
            RE  G   GE E AL+    G+       AF +++A  EDI+  LRD RPP   P L   QASD++ P SY  A+AS    +W DSM RE  GLL+AD ++                    + DE G   K K+RLVARG  QR
Sbjct:  382 REPGGAGAGEKEGALAAADPGAGGAGFPLAFATLLANREDIDATLRDQRPPEQRPGLPHCQASDLRVPKSYKEALASEHRHLWNDSMQREFYGLLEADVYSG-------------------EADEFGWPTKVKSRLVARGDMQR 506
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KN68_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN68_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.730e-13
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE 434
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF   +E
Sbjct:  339 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTFTPAKE 414
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JHP4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP4_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.600e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTFAAVQE*QSVDNVIDS 464
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS     W DSM RE  GLL+A TF   +  Q V+N I++
Sbjct:  217 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHFWSDSMQREFYGLLEAGTFTPAKL-QLVENAINA 301
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5JC48_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC48_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.850e-13
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 419
            AF +++A  ED++V LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE  GLL+A TF
Sbjct:  109 AFATLLANREDVDVTLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF 179
[Close]
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Match: A0A6H5KGX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.120e-13
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 3 
Query:  207 AFVSMMAEHEDIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSREILGLLDADTF 419
            AF +++A  EDI+  LRD RPP   P+L   QASD++ P SY  AMAS    +W DSM RE+ GLL+A TF
Sbjct:  396 AFATLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQRELYGLLEAGTF 466
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100850.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIP2_9PHAE7.990e-2452.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KK77_9PHAE9.930e-2350.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KA04_9PHAE2.540e-1846.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUT9_9PHAE4.550e-1846.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KUX3_9PHAE8.240e-1846.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M3_9PHAE1.040e-1439.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN68_9PHAE2.730e-1350.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHP4_9PHAE3.600e-1347.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC48_9PHAE4.850e-1352.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX4_9PHAE7.120e-1352.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100850contigL-digitata_M_contig100850:385..935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size551
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.657223-UTR-L-digitata_M_contig100850:384..4701682406611.657223-UTR-L-digitata_M_contig100850:384..470Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100850 385..470 +
1682406611.6748657-UTR-L-digitata_M_contig100850:821..9351682406611.6748657-UTR-L-digitata_M_contig100850:821..935Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100850 822..935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.6663675-CDS-L-digitata_M_contig100850:470..8211682406611.6663675-CDS-L-digitata_M_contig100850:470..821Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100850 471..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100850.1.1prot_L-digitata_M_contig100850.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100850 471..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100850.1.1

>prot_L-digitata_M_contig100850.1.1 ID=prot_L-digitata_M_contig100850.1.1|Name=mRNA_L-digitata_M_contig100850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=117bp
MPGRTRGQSRAIREEKGLQPGESEQALSHYLGSLSMMDRTAFVSMMAEHE
DIEVALRDDRPPRDSPNLSDYQASDMQTPTSYAGAMASGQAPIWCDSMSR
EILGLLDADTFAAVQE*
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mRNA from alignment at L-digitata_M_contig100850:385..935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100850.1.1 ID=mRNA_L-digitata_M_contig100850.1.1|Name=mRNA_L-digitata_M_contig100850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=551bp|location=Sequence derived from alignment at L-digitata_M_contig100850:385..935+ (Laminaria digitata LdigPH10_18mv male)
AGTCTTCGCCTGCTGCATCGTCGCCGGGAATACCGCCGATACCACAGCAT
GTTGTCCGGGAGCTTCGGCATCACGGGGAGGTGCGGATGCCGGGGCGTAC
GAGAGGCCAGAGCAGGGCTATCCGCGAGGAAAAGGGACTGCAGCCGGGTG
AGTCGGAGCAGGCTCTCAGCCACTACCTTGGGAGTCTATCGATGATGGAC
CGCACTGCATTCGTGTCAATGATGGCGGAACATGAGGACATCGAAGTGGC
ACTCCGCGACGATCGGCCGCCCCGCGACTCTCCGAATCTGTCGGACTACC
AGGCGAGTGATATGCAGACGCCCACGAGCTATGCCGGGGCTATGGCCTCG
GGGCAAGCCCCGATCTGGTGCGATTCGATGTCGCGTGAAATCCTTGGCCT
CCTGGATGCGGATACCTTCGCGGCGGTGCAGGAATAGCAATCAGTCGACA
ACGTCATCGACTCCAAGTGGGTGTTCGACTTGAAGAAAGACGAGCTTGGA
CATATCGTTAAGTTCAAGGCGAGGCTGGTGGCGCGGGGATTTAAACAGCG
T
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Coding sequence (CDS) from alignment at L-digitata_M_contig100850:385..935+

>mRNA_L-digitata_M_contig100850.1.1 ID=mRNA_L-digitata_M_contig100850.1.1|Name=mRNA_L-digitata_M_contig100850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=351bp|location=Sequence derived from alignment at L-digitata_M_contig100850:385..935+ (Laminaria digitata LdigPH10_18mv male)
ATGCCGGGGCGTACGAGAGGCCAGAGCAGGGCTATCCGCGAGGAAAAGGG
ACTGCAGCCGGGTGAGTCGGAGCAGGCTCTCAGCCACTACCTTGGGAGTC
TATCGATGATGGACCGCACTGCATTCGTGTCAATGATGGCGGAACATGAG
GACATCGAAGTGGCACTCCGCGACGATCGGCCGCCCCGCGACTCTCCGAA
TCTGTCGGACTACCAGGCGAGTGATATGCAGACGCCCACGAGCTATGCCG
GGGCTATGGCCTCGGGGCAAGCCCCGATCTGGTGCGATTCGATGTCGCGT
GAAATCCTTGGCCTCCTGGATGCGGATACCTTCGCGGCGGTGCAGGAATA
G
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