prot_L-digitata_M_contig10038.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig10038.1.1
Unique Name	prot_L-digitata_M_contig10038.1.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	475

Homology

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BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: D7FVZ6_ECTSI (C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ6_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 4.410e-114
Identity = 221/475 (46.53%), Postives = 262/475 (55.16%), Query Frame = 0

Query:    1 MRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRERFPSERIEGYMTKRHQTGRSFQRRSLDSETLSFTWTGXXXXXXXXXXXXXXXXXXXATADGGSP--RTFPPWLWPEVDLRSDETRRS-SELFVGEAGEAAGEADVNEIMDTPTSEGNPQQSPVSSGSXXXXXXXXXXXXSGKVALPELCELCGKRYKTPQALRTHTRQLHELGQEGGKPLAPRKEEPCPHSGCGRVFTSDRALEQHVSAKHGGGGNVDIKPDWFEETIYLLQPXXXXXXXXXXXXXXXXXXXXXXCEDXXXXXXXXXXXXXXXDSDGDAVGERLENVFIGSREECDVPRGEGLAVDHAEAEEGVDDVWHCVICGFWFSTAGNARRHLDNLRPPIEGAVTVHECATCLKDFGSRRALLQHANFC 472
            MRRHRSFLGH FHAV +++     P          S  C      G G V A P          ++L+PGGAVHVTLA DQPERWGL EQAARHGFSL HR RFP+E+I+GYMTKRHQTGRSF++R   SETLSF+W                     A  D G+    T PPWLWPEV +  DE   + +E    E   A G    ++ +D PT   +        G             + +  LPE+CELCGKRYK+ QALRTHTRQ HELGQEGG  +AP+KEE CPH  CGRVFTSDRAL+QHVSAKH G  NVDIKPDWF  +IY L+P XXXX                                    ++G A       V     E   VP  E  A       EG      C +CG+WF++  + ++HLDNLRPPIEGAVT ++C TC+KDFGSRRALLQHA FC
Sbjct:  135 MRRHRSFLGHFFHAVANSAIGSTGPVGGGG-----SGACGVSDIGGGGAVAAVPGMADRQGGKGAILAPGGAVHVTLALDQPERWGLEEQAARHGFSLVHRRRFPAEKIDGYMTKRHQTGRSFRQRVQASETLSFSWAASAQA---------------ARGDDGAAFGSTLPPWLWPEVVMCGDEASPARAETATDEPVRAGG----SDAVDAPTPAVDDNVRTRGGGRKGGGCTDRTGAAAAEALLPEVCELCGKRYKSAQALRTHTRQFHELGQEGGVAVAPKKEERCPHPNCGRVFTSDRALDQHVSAKHSGD-NVDIKPDWFVGSIYHLEPPXXXXVPTDGDMVVERGQDGGI----PAANAAGSDQICRGTAEG-AEATTTPKVVETPPEMLGVPAREVPATTVCTNIEGNSLCQRCDVCGYWFTSPEDLQQHLDNLRPPIEGAVTRYDCGTCVKDFGSRRALLQHAKFC 579

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FVZ6_ECTSI	4.410e-114	46.53	C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 246..269 e-value: 0.26 score: 20.4 coord: 417..437 e-value: 66.0 score: 6.0 coord: 450..470 e-value: 170.0 score: 2.5 coord: 285..310 e-value: 0.0086 score: 25.3
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 248..269
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 287..310
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 246..274 score: 9.431686
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 285..315 score: 8.621145
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 235..313 e-value: 3.1E-8 score: 35.5
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 248..270 e-value: 3.8E-4 score: 20.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..292
None	No IPR available	PANTHER	PTHR24408	ZINC FINGER PROTEIN	coord: 414..469
None	No IPR available	PANTHER	PTHR24408:SF38	RE23320P-RELATED	coord: 248..313
None	No IPR available	PANTHER	PTHR24408	ZINC FINGER PROTEIN	coord: 248..313
None	No IPR available	PANTHER	PTHR24408:SF38	RE23320P-RELATED	coord: 414..469
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 247..306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig10038	contig	L-digitata_M_contig10038:1340..3304 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig10038.1.1	mRNA_L-digitata_M_contig10038.1.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig10038 596..3304 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig10038.1.1 ID=prot_L-digitata_M_contig10038.1.1|Name=mRNA_L-digitata_M_contig10038.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=475bp
MRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGV
KAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAH
RERFPSERIEGYMTKRHQTGRSFQRRSLDSETLSFTWTGAGSGGGGGRGG
GVAAAAVAATADGGSPRTFPPWLWPEVDLRSDETRRSSELFVGEAGEAAG
EADVNEIMDTPTSEGNPQQSPVSSGSGSDGDGDCSGNGSGKVALPELCEL
CGKRYKTPQALRTHTRQLHELGQEGGKPLAPRKEEPCPHSGCGRVFTSDR
ALEQHVSAKHGGGGNVDIKPDWFEETIYLLQPPPAPASGGGGGGGGGGGG
GGGGCEDGGGGGGDDGSGGGSGDSDGDAVGERLENVFIGSREECDVPRGE
GLAVDHAEAEEGVDDVWHCVICGFWFSTAGNARRHLDNLRPPIEGAVTVH
ECATCLKDFGSRRALLQHANFCGR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR036236	Znf_C2H2_sf