mRNA_L-digitata_M_contig10038.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: D7FVZ6_ECTSI (C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ6_ECTSI) HSP 1 Score: 457 bits (1177), Expect = 2.230e-151 Identity = 273/555 (49.19%), Postives = 324/555 (58.38%), Query Frame = 2
Query: 164 FEIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRR----QHEQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRERFPSERIEGYMTKRHQTGRSFQRRSLDSETLSFTWTGXXXXXXXXXXXXXXXXXXXATADGGSP--RTFPPWLWPEVDLRSDETRRS-SELFVGEAGEAAGEADVNEIMDTPTSEGNPQQSPVSSGSXXXXXXXXXXXXSGKVALPELCELCGKRYKTPQALRTHTRQLHELGQEGGKPLAPRKEEPCPHSGCGRVFTSDRALEQHVSAKHGGGGNVDIKPDWFEETIYLLQPXXXXXXXXXXXXXXXXXXXXXXCEDXXXXXXXXXXXXXXXDSDGDAVGERLENVFIGSREECDVPRGEGLAVDHAEAEEGVDDVWHCVICGFWFSTAGNARRHLDNLRPPIEGAVTVHECATCLKDFGSRRALLQHANFC 1807
FEIVATSFDG LDLL KY E I+A LR++G LHNVDAT+LD+RV+ +PS RR Q +Q+EH+IFNHPHTGTEDMRRHRSFLGH FHAV +++ P S C G G V A P ++L+PGGAVHVTLA DQPERWGL EQAARHGFSL HR RFP+E+I+GYMTKRHQTGRSF++R SETLSF+W A D G+ T PPWLWPEV + DE + +E E A G ++ +D PT + G + + LPE+CELCGKRYK+ QALRTHTRQ HELGQEGG +AP+KEE CPH CGRVFTSDRAL+QHVSAKH G NVDIKPDWF +IY L+P XXXX ++G A V E VP E A EG C +CG+WF++ + ++HLDNLRPPIEGAVT ++C TC+KDFGSRRALLQHA FC
Sbjct: 55 FEIVATSFDGRLDLLSKYAEAPGIVAALRSVGVTVLHNVDATALDSRVLQVSPSDRRRAQQQQQQFEHVIFNHPHTGTEDMRRHRSFLGHFFHAVANSAIGSTGPVGGGG-----SGACGVSDIGGGGAVAAVPGMADRQGGKGAILAPGGAVHVTLALDQPERWGLEEQAARHGFSLVHRRRFPAEKIDGYMTKRHQTGRSFRQRVQASETLSFSWAASAQA---------------ARGDDGAAFGSTLPPWLWPEVVMCGDEASPARAETATDEPVRAGG----SDAVDAPTPAVDDNVRTRGGGRKGGGCTDRTGAAAAEALLPEVCELCGKRYKSAQALRTHTRQFHELGQEGGVAVAPKKEERCPHPNCGRVFTSDRALDQHVSAKHSGD-NVDIKPDWFVGSIYHLEPPXXXXVPTDGDMVVERGQDGGI----PAANAAGSDQICRGTAEG-AEATTTPKVVETPPEMLGVPAREVPATTVCTNIEGNSLCQRCDVCGYWFTSPEDLQQHLDNLRPPIEGAVTRYDCGTCVKDFGSRRALLQHAKFC 579
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: W7TQ78_9STRA (C2h2 zinc finger protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ78_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.590e-15 Identity = 76/239 (31.80%), Postives = 100/239 (41.84%), Query Frame = 2
Query: 167 EIVATSFDGPLDLLRKYPETCKILAGLRALGAIA--LHNVDATSL--DARVVGTAPSRRRQH---------------------EQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRERFPSERIEGYMT---KRHQTGRSFQRRSLDSETLSFT 799
+++ATSFD P +L RKY E+ + L ALGA ++ VDA ++ R V +R E ++H+IFNHPHTG ED+ RHR+ L H + A GG VHVTLAGDQ +RW L + AAR GF L H F + + KRHQ+G+SF+ R L S T SFT
Sbjct: 38 QLLATSFDNPQELHRKYTESHATVTRLEALGARVRVIYGVDALNILETLRRVQMEEGKRADSFREPPHDSVSNCARTADGHPLEVFDHVIFNHPHTGWEDIHRHRALLAHFLESAKAVLACSTTQGTE-----------------------------------------GGQVHVTLAGDQCKRWKLLQTAARLGFKLRHICDFYRQFGPDHPPVDIKRHQSGKSFRIRGLPSFTYSFT 235
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: A0A4D9D783_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D783_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 4.020e-15 Identity = 78/244 (31.97%), Postives = 102/244 (41.80%), Query Frame = 2
Query: 167 EIVATSFDGPLDLLRKYPETCKILAGLRALGAIA--LHNVDATSL--DARVVGTAPSRRRQH---------------------EQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAH-----RERFPSERIEGYMTKRHQTGRSFQRRSLDSETLSFTWTG 808
+++ATSFD P +L +KY E+ + L ALGA L+ VDA ++ R V +R + E ++H+IFNHPHTG ED+ RHR+ L H + A GG VHVTLAGDQ +RW L + AAR GF L H R+ P KRHQ+G+SF+ R L S T SFT G
Sbjct: 38 QLLATSFDNPQELHKKYTESHATVTRLEALGARVRVLYGVDALNILETLRHVHMEEGKRAESFREPPHDSVSNCARTADGQPLEVFDHVIFNHPHTGWEDIHRHRALLAHFLESAKAVLACSTTQGTE-----------------------------------------GGQVHVTLAGDQCKRWKLLQTAARLGFKLRHICDFYRQFGPDP--PPVDIKRHQSGKSFRIRGLPSFTYSFTLEG 238
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: A0A8K1C3C0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3C0_PYTOL) HSP 1 Score: 87.4 bits (215), Expect = 1.100e-14 Identity = 68/212 (32.08%), Postives = 93/212 (43.87%), Query Frame = 2
Query: 170 IVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQH--EQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPG-GAVHVTLAGDQPERWGLREQAARHGFSLAHR----ERFPSERIEGYMTKRHQTGRSFQRRSLDSE 784
+VA+S+D +LL KYPE+ +I L+ LGA LH +DAT+L A + A ++ IIFNHPH G E++RRH+S L H + SA +L P G +H+TLA QPERW RE+ + G L + P ++ Y KRHQ G+SF R L E
Sbjct: 56 LVASSYDEYQELLEKYPESIRICTQLQELGADLLHRIDATNLRATLEACASENGEVQLPTTFDVIIFNHPHCGEENVRRHQSLLSHFY------------------------------------------------ASAKELLHPTRGELHLTLADGQPERWEARERGTKAGLVLVEEIEDVDAHPVYSVD-YERKRHQNGKSFHRVLLHGE 218
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: G5AE26_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AE26_PHYSP) HSP 1 Score: 87.4 bits (215), Expect = 1.190e-14 Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 2
Query: 158 RPFEIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQHEQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRE--RFPSERIEG--YMTKRHQTGRSFQRRSLDSE 784
RP ++ ATS+D +L+ KYPE+ +I A L+ LGA LH VDAT++ +V + + H ++FNHPH G E++RRH+S L H + + + + V ++ SG + +TLA QPERW ++A G L HR+ S+ G Y KRHQ G+SF + +L E
Sbjct: 64 RPLQLTATSYDSYDELVAKYPESKRICAQLKELGASVLHRVDATNIRESLVAAGATSDKFHS----VVFNHPHCGEENVRRHQSLLSHFYASALEVLEKGEGDEV------------EQSEESG--------------------------ILLTLAEGQPERWQAVQRALSAGLKL-HRQVDNVDSDAKFGLEYERKRHQNGKSFHQVTLHGE 233
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: A0A6A3UCE6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UCE6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.250e-14 Identity = 65/215 (30.23%), Postives = 96/215 (44.65%), Query Frame = 2
Query: 161 PFEIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQHEQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRERFPSERIEG-------YMTKRHQTGRSFQRRSLDSE 784
P E+ ATS+D +L+ KYPE+ +I A L+ LGA LH VDAT++ +V + + H ++FNHPH G E++RRH+S L H + + + Q +S V +TLA QPERW ++A G L HR+ + ++G Y KRHQ G+SF + +L E
Sbjct: 64 PLELTATSYDSYEELVAKYPESKRICAQLKELGASVLHRVDATNIRESLVAAGATPDKFHA----VVFNHPHCGEENVRRHQSLLSHFYASALEVLEQEE-------------------------------------------VSEDSGVLLTLAEGQPERWQAVQRALSAGLKL-HRQ---IDDVDGDDTFGVAYERKRHQNGKSFHQVTLHGE 227
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: A0A7R9U7Z0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z0_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.770e-14 Identity = 65/204 (31.86%), Postives = 87/204 (42.65%), Query Frame = 2
Query: 161 PFEIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQHEQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRERFPSERIEGYMTKRHQTGRSFQRRS 772
P + ATSFD ++ RKYPE IL L+ H VDA+ V+ T + RR ++ ++FN PH GTE+ + H FL H+ V VL+ GGA+H+TLA Q ERW L A R F +A + ER+ GY KRHQ G SF+RR+
Sbjct: 61 PLLLTATSFDSREEVDRKYPEAAAILEELQRADVCVRHRVDAS-----VLWTDAALRRL--PFDIVVFNFPHLGTENAKLHSKFLAHVLSGVS------------------------------------------------DVLAVGGALHLTLAEGQAERWRLSATAERLFFEVAEQVPLRLERLPGYEQKRHQCGGSFRRRT 209
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: A0A0W8CDT8_PHYNI (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CDT8_PHYNI) HSP 1 Score: 86.7 bits (213), Expect = 2.030e-14 Identity = 66/212 (31.13%), Postives = 99/212 (46.70%), Query Frame = 2
Query: 161 PFEIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQHEQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHRE--RFPSERIEG--YMTKRHQTGRSFQRRSLDSE 784
P ++ A+S+D +L+ KYPE +I A L+ LGA LH VDAT+L +V + + ++ +IFNHPH G E++RRH+S L H + + + V +D SG + +TLA QPERW E+A + G L HR+ ++ + G Y KRHQ G+SF + +L E
Sbjct: 63 PLQLTASSYDSYDELVAKYPECKRICAQLKELGASVLHRVDATNLRESLVAAGAEQLK----FDAVIFNHPHCGEENVRRHQSLLSHFYASALD---------VIEDNEEDEESG----------------------------------ILLTLAEGQPERWQAVERALKAGLRL-HRQVDEVDNDEVFGLVYDRKRHQNGKSFHQVTLHGE 226
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: A0A5D6Y3S2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3S2_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.810e-14 Identity = 70/224 (31.25%), Postives = 95/224 (42.41%), Query Frame = 2
Query: 167 EIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQHE-------------QYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHR-ERFPSERIEG--YMTKRHQTGRSFQRRSLDSETL 790
++ A+SFD +L KYPE + + LRALGA LH VDAT L A + + E +++ ++FNHPH G E++RRHRS L H + ASA+ +L+P G + +TLA QP RW +A R G L + + S+ G Y KRHQ GRSF R L E L
Sbjct: 38 QLAASSFDSAQELAAKYPEAPRHVHQLRALGARVLHRVDATQLRASLAQAETAEVGDEEGGPAPRPASPLPARFDVVVFNHPHCGEENVRRHRSLLSHFY-----ASAR-------------------------------------------ELLAPRGEIRLTLAAGQPARWEALARARRAGLRLTQQVDDVDSDEAFGLAYERKRHQNGRSFHRVLLHGERL 213
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Match: D0NMF8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NMF8_PHYIT) HSP 1 Score: 85.9 bits (211), Expect = 3.870e-14 Identity = 62/211 (29.38%), Postives = 97/211 (45.97%), Query Frame = 2
Query: 161 PFEIVATSFDGPLDLLRKYPETCKILAGLRALGAIALHNVDATSLDARVVGTAPSRRRQHEQYEHIIFNHPHTGTEDMRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVKAAPVAPAGGFSAVSVLSPGGAVHVTLAGDQPERWGLREQAARHGFSLAHR-ERFPSERIEG--YMTKRHQTGRSFQRRSLDSE 784
P ++ ATS+D +L+ KYPE+ +I L+ LGA +H VDAT+L +V + ++ ++FNHPH G E++RRH+S L H + + + + DEG+ + +TLA QPERW E+A + G L R + ++ + G Y KRHQ G+SF + +L E
Sbjct: 63 PVQLTATSYDSYNELVAKYPESKRICGQLKELGASVMHRVDATNLRESLVAAGAEQLT----FDAVVFNHPHCGEENVRRHQSLLSHFYTSALEILEDSEE---------------DEGNG----------------------------ILLTLAEGQPERWQAVERALQAGLRLHRRVDDVDNDAVFGLKYERKRHQNGKSFHQVTLHGE 226 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10038.1.1 >prot_L-digitata_M_contig10038.1.1 ID=prot_L-digitata_M_contig10038.1.1|Name=mRNA_L-digitata_M_contig10038.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=475bp MRRHRSFLGHLFHAVMHASAQPRDPAVNSARADDRSSGCDEGSSSGRGGVback to top mRNA from alignment at L-digitata_M_contig10038:596..3304+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10038.1.1 ID=mRNA_L-digitata_M_contig10038.1.1|Name=mRNA_L-digitata_M_contig10038.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2709bp|location=Sequence derived from alignment at L-digitata_M_contig10038:596..3304+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10038:596..3304+ >mRNA_L-digitata_M_contig10038.1.1 ID=mRNA_L-digitata_M_contig10038.1.1|Name=mRNA_L-digitata_M_contig10038.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1425bp|location=Sequence derived from alignment at L-digitata_M_contig10038:596..3304+ (Laminaria digitata LdigPH10_18mv male)back to top |