prot_L-digitata_M_contig10033.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig10033.1.1
Unique Nameprot_L-digitata_M_contig10033.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length178
Homology
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.540e-65
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 0
Query:   28 ELVPVEFKVDSRFIADNDVVLTTYELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIE 170
            E V V+FKVD+  +ADNDVVLTTYELLRT+ S+F+KINFHRCVLDECQEIK ATT IA+MC QV A+HRWMVSGTPI+  IDSLHGELNFLQ VWPFSLQNDGFWEKK+GEPF+AK+  +L+LLRALI VVMM HSKSQ  ++
Sbjct:  504 ETVRVDFKVDAALVADNDVVLTTYELLRTRKSLFQKINFHRCVLDECQEIKTATTNIAQMCQQVKASHRWMVSGTPIAGKIDSLHGELNFLQ-VWPFSLQNDGFWEKKVGEPFEAKDYGALELLRALIGVVMMRHSKSQTYVD 645          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: K8Z7M8_NANGC (Snf2 superfamily rad5 protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7M8_NANGC)

HSP 1 Score: 144 bits (364), Expect = 2.800e-39
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 0
Query:   30 VPVEFKVDSRFIADNDVVLTTYELLRTKPS--IFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQV 167
            V + +  +   + D D+V+TTY++LR      + R +++HR +LDECQEI+ +T+ IAK+C+ + ATHRWMVSGTP+ +S+D L GEL FL  V PFSL NDGFWE K+G P++ +E+++L LL  L+ V MM HSK QV
Sbjct:  130 VELRYWYERNEVWDADLVITTYDVLRNANGGPMLRHVHWHRVILDECQEIRTSTSAIAKLCSVLHATHRWMVSGTPLFASVDDLFGELQFLA-VSPFSLANDGFWEAKVGGPWRRREESALRLLHLLVSVCMMRHSKGQV 268          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.530e-36
Identity = 68/139 (48.92%), Postives = 99/139 (71.22%), Query Frame = 0
Query:   30 VPVEFKVDSRFIADNDVVLTTYELLRTKPS--IFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQ 166
            V + +  +   + D D+V+TTY+ LR      + R++++HR +LDECQEI+ +T+ IA++C+ + ATHRWMVSGTP+ +S+D L GEL FL  V PFSL NDGFWE K+G P++ +E+++L LL  L+ V MM HSK Q
Sbjct:  730 VELRYWYERNEVWDADLVITTYDALRNANGGPMLRQVHWHRVILDECQEIRTSTSAIARLCSVLHATHRWMVSGTPLFASVDDLFGELQFLA-VSPFSLANDGFWEAKVGGPWRRREESALRLLHLLVSVCMMRHSKGQ 867          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S3SF79_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SF79_EMIHU)

HSP 1 Score: 129 bits (323), Expect = 3.000e-31
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = 0
Query:   41 IADNDVVLTTYE-LLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQN-DGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLI 177
            +A +DVVLTTY+ LL++KP +   + + R VLDE QE+  AT+++A  C  + A  RWMVSGTP+SSSID L GEL FL+ + PF   + DGFWE  IG P+K +E+++LD LR L+R +MM HSKS  R+   G  L+
Sbjct:  601 LARHDVVLTTYQQLLQSKP-LLAAVAWARVVLDEMQEVAQATSELAVSCEALHAPRRWMVSGTPLSSSIDDLKGELAFLR-ITPFGANHEDGFWEHNIGRPYKQQEESALDALRVLLRALMMRHSKSGQRVLGSGAALL 737          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S0NI28_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI28_MICPS)

HSP 1 Score: 122 bits (306), Expect = 2.610e-30
Identity = 68/162 (41.98%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   41 IADNDVVLTTYELLR----------------TKP------SIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSL--QNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLII 178
            +ADNDVVL TY  L+                T P       I  ++++ R VLDECQ ++ +TT++A  C  + A  RWMVSGTP+   +D L+GEL FL  VWPF L  Q DGFW  ++G P+ AK+  +L LL AL+R V++ H+K+Q R+E+G  +L +
Sbjct:   89 LADNDVVLATYPSLQREAKRRRRETGTGDGATAPRNERAQKILSRVSWRRVVLDECQMVRSSTTQLAVACRCLVADFRWMVSGTPLHGGVDDLNGELAFLG-VWPFCLSDQTDGFWAHRVGRPWAAKDPDALPLLHALLRGVIVRHTKAQRRVEDGTPLLTL 249          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A835Z4V2_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.770e-29
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 0
Query:   62 RKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWM---------VSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSK 164
            + +++HRCVLDECQE+K  TT +A MC  + +THRWM         VSGTP++ SI  L GEL FL+ VWPF+LQNDGFWE+K+  PF+ +   +L L+ AL+ +  M HSK
Sbjct:  302 KSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLR-VWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSK 412          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S4K2H7_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K2H7_GUITH)

HSP 1 Score: 121 bits (303), Expect = 1.290e-28
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   39 RFIADNDVVLTTYELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQN--DGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQ 166
            R   + DVVLTTY +L ++   F+K+ + R VLDE QE++ A + +AK C+++    RWMVSGTP+ SS+  LHGEL FL  + PF L +  DGFWE +I +PF  ++ ++L+LL  L+R VM+ HSKSQ
Sbjct:  513 RVFFEEDVVLTTYPVLSSERLSFQKVRWERVVLDEMQEVRHAKSLLAKTCDKLRCNTRWMVSGTPLYSSVSDLHGELKFLG-ILPFCLPDELDGFWEIRIAKPFSERKRSALELLDLLLRNVMIRHSKSQ 641          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S4K2G9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K2G9_GUITH)

HSP 1 Score: 121 bits (303), Expect = 1.420e-28
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   39 RFIADNDVVLTTYELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQN--DGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQ 166
            R   + DVVLTTY +L ++   F+K+ + R VLDE QE++ A + +AK C+++    RWMVSGTP+ SS+  LHGEL FL  + PF L +  DGFWE +I +PF  ++ ++L+LL  L+R VM+ HSKSQ
Sbjct:  513 RVFFEEDVVLTTYPVLSSERLSFQKVRWERVVLDEMQEVRHAKSLLAKTCDKLRCNTRWMVSGTPLYSSVSDLHGELKFLG-ILPFCLPDELDGFWEIRIAKPFSERKRSALELLDLLLRNVMIRHSKSQ 641          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC)

HSP 1 Score: 119 bits (299), Expect = 4.960e-28
Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = 0
Query:   41 IADNDVVLTTYELLRTKPS----------------------IFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSL--QNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLII 178
            +ADNDVVL TY  L+ +                        I  ++++ R VLDECQ ++ +TT++A  C  + A  RWMVSGTP+   +D L+GEL FL  VWPF L  Q DGFW  ++G P+ AK+  +L LL AL+R V++ H+K+Q RI +G  +L +
Sbjct:  559 LADNDVVLATYPSLQKEAKKRRRETGTGDGASAPRNERAQKILSRVSWRRVVLDECQMVRSSTTQLAVACRCLVADFRWMVSGTPLHGGVDDLNGELAFLG-VWPFCLSDQTDGFWAHRVGRPWAAKDPDALPLLHALLRGVIVRHTKAQRRIVDGTPLLTL 719          
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S0KTE5_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KTE5_MICPS)

HSP 1 Score: 119 bits (297), Expect = 8.240e-28
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 0
Query:   41 IADNDVVLTTYELLRTK-----------------------PSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSL--QNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLII 178
            +ADNDVVL TY  L+ +                         I  ++++ R VLDECQ ++ +TT++A  C  + A  RWMVSGTP+   +D L+GEL FL  VWPF L  Q DGFW  ++G P+ AK+  +L LL AL+R V++ H+K+Q R+ +G  +L +
Sbjct:   89 LADNDVVLATYPSLQKEVKKRRRETGTGDGAAPRPRNERAQKILSRVSWRRVVLDECQMVRSSTTQLAVACRCLVADFRWMVSGTPLHGGVDDLNGELAFLG-VWPFCLSDQTDGFWAHRVGRPWAAKDPDALPLLHALLRGVIVRHTKAQRRLADGTPLLTL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K8_ECTSI1.540e-6576.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8Z7M8_NANGC2.800e-3950.00Snf2 superfamily rad5 protein (Fragment) n=2 Tax=N... [more]
A0A4D9CZ02_9STRA7.530e-3648.92Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S3SF79_EMIHU3.000e-3150.36Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S0NI28_MICPS2.610e-3041.98Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A835Z4V2_9STRA1.770e-2950.89SNF2 family N-terminal domain-containing protein n... [more]
A0A7S4K2H7_GUITH1.290e-2847.69Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4K2G9_GUITH1.420e-2847.69Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
C1EH46_MICCC4.960e-2840.74SNF2 super family n=1 Tax=Micromonas commoda (stra... [more]
A0A7S0KTE5_MICPS8.240e-2839.88Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 28..172
e-value: 2.7E-24
score: 87.4
IPR000330SNF2, N-terminalPFAMPF00176SNF2-rel_domcoord: 35..168
e-value: 3.2E-25
score: 88.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR45626TRANSCRIPTION TERMINATION FACTOR 2-RELATEDcoord: 37..166
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 39..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10033contigL-digitata_M_contig10033:1973..8174 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10033.1.1mRNA_L-digitata_M_contig10033.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig10033 1973..8174 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig10033.1.1 ID=prot_L-digitata_M_contig10033.1.1|Name=mRNA_L-digitata_M_contig10033.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=178bp
AGNSTGDGTGNGVGNGSGTGAGNGAAPELVPVEFKVDSRFIADNDVVLTT
YELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVS
GTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDL
LRALIRVVMMHHSKSQVRIEEGGGVLII
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038718SNF2-like_sf
IPR000330SNF2_N
IPR027417P-loop_NTPase