mRNA_L-digitata_M_contig10033.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig10033.1.1
Unique Name	mRNA_L-digitata_M_contig10033.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.540e-65
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 1

Query:   82 ELVPVEFKVDSRFIADNDVVLTTYELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIE 510
            E V V+FKVD+  +ADNDVVLTTYELLRT+ S+F+KINFHRCVLDECQEIK ATT IA+MC QV A+HRWMVSGTPI+  IDSLHGELNFLQ VWPFSLQNDGFWEKK+GEPF+AK+  +L+LLRALI VVMM HSKSQ  ++
Sbjct:  504 ETVRVDFKVDAALVADNDVVLTTYELLRTRKSLFQKINFHRCVLDECQEIKTATTNIAQMCQQVKASHRWMVSGTPIAGKIDSLHGELNFLQ-VWPFSLQNDGFWEKKVGEPFEAKDYGALELLRALIGVVMMRHSKSQTYVD 645

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: K8Z7M8_NANGC (Snf2 superfamily rad5 protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7M8_NANGC)

HSP 1 Score: 144 bits (364), Expect = 2.800e-39
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 1

Query:   88 VPVEFKVDSRFIADNDVVLTTYELLRTKPS--IFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQV 501
            V + +  +   + D D+V+TTY++LR      + R +++HR +LDECQEI+ +T+ IAK+C+ + ATHRWMVSGTP+ +S+D L GEL FL  V PFSL NDGFWE K+G P++ +E+++L LL  L+ V MM HSK QV
Sbjct:  130 VELRYWYERNEVWDADLVITTYDVLRNANGGPMLRHVHWHRVILDECQEIRTSTSAIAKLCSVLHATHRWMVSGTPLFASVDDLFGELQFLA-VSPFSLANDGFWEAKVGGPWRRREESALRLLHLLVSVCMMRHSKGQV 268

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.530e-36
Identity = 68/139 (48.92%), Postives = 99/139 (71.22%), Query Frame = 1

Query:   88 VPVEFKVDSRFIADNDVVLTTYELLRTKPS--IFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQ 498
            V + +  +   + D D+V+TTY+ LR      + R++++HR +LDECQEI+ +T+ IA++C+ + ATHRWMVSGTP+ +S+D L GEL FL  V PFSL NDGFWE K+G P++ +E+++L LL  L+ V MM HSK Q
Sbjct:  730 VELRYWYERNEVWDADLVITTYDALRNANGGPMLRQVHWHRVILDECQEIRTSTSAIARLCSVLHATHRWMVSGTPLFASVDDLFGELQFLA-VSPFSLANDGFWEAKVGGPWRRREESALRLLHLLVSVCMMRHSKGQ 867

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S3SF79_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SF79_EMIHU)

HSP 1 Score: 129 bits (323), Expect = 3.000e-31
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = 1

Query:  121 IADNDVVLTTYE-LLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQN-DGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLI 531
            +A +DVVLTTY+ LL++KP +   + + R VLDE QE+  AT+++A  C  + A  RWMVSGTP+SSSID L GEL FL+ + PF   + DGFWE  IG P+K +E+++LD LR L+R +MM HSKS  R+   G  L+
Sbjct:  601 LARHDVVLTTYQQLLQSKP-LLAAVAWARVVLDEMQEVAQATSELAVSCEALHAPRRWMVSGTPLSSSIDDLKGELAFLR-ITPFGANHEDGFWEHNIGRPYKQQEESALDALRVLLRALMMRHSKSGQRVLGSGAALL 737

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S0NI28_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI28_MICPS)

HSP 1 Score: 122 bits (306), Expect = 2.610e-30
Identity = 68/162 (41.98%), Postives = 97/162 (59.88%), Query Frame = 1

Query:  121 IADNDVVLTTYELLR----------------TKP------SIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSL--QNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLII 534
            +ADNDVVL TY  L+                T P       I  ++++ R VLDECQ ++ +TT++A  C  + A  RWMVSGTP+   +D L+GEL FL  VWPF L  Q DGFW  ++G P+ AK+  +L LL AL+R V++ H+K+Q R+E+G  +L +
Sbjct:   89 LADNDVVLATYPSLQREAKRRRRETGTGDGATAPRNERAQKILSRVSWRRVVLDECQMVRSSTTQLAVACRCLVADFRWMVSGTPLHGGVDDLNGELAFLG-VWPFCLSDQTDGFWAHRVGRPWAAKDPDALPLLHALLRGVIVRHTKAQRRVEDGTPLLTL 249

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A835Z4V2_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.770e-29
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1

Query:  184 RKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWM---------VSGTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSK 492
            + +++HRCVLDECQE+K  TT +A MC  + +THRWM         VSGTP++ SI  L GEL FL+ VWPF+LQNDGFWE+K+  PF+ +   +L L+ AL+ +  M HSK
Sbjct:  302 KSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLR-VWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSK 412

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S4K2H7_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K2H7_GUITH)

HSP 1 Score: 121 bits (303), Expect = 1.290e-28
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 1

Query:  115 RFIADNDVVLTTYELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQN--DGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQ 498
            R   + DVVLTTY +L ++   F+K+ + R VLDE QE++ A + +AK C+++    RWMVSGTP+ SS+  LHGEL FL  + PF L +  DGFWE +I +PF  ++ ++L+LL  L+R VM+ HSKSQ
Sbjct:  513 RVFFEEDVVLTTYPVLSSERLSFQKVRWERVVLDEMQEVRHAKSLLAKTCDKLRCNTRWMVSGTPLYSSVSDLHGELKFLG-ILPFCLPDELDGFWEIRIAKPFSERKRSALELLDLLLRNVMIRHSKSQ 641

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S4K2G9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K2G9_GUITH)

HSP 1 Score: 121 bits (303), Expect = 1.420e-28
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 1

Query:  115 RFIADNDVVLTTYELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSLQN--DGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQ 498
            R   + DVVLTTY +L ++   F+K+ + R VLDE QE++ A + +AK C+++    RWMVSGTP+ SS+  LHGEL FL  + PF L +  DGFWE +I +PF  ++ ++L+LL  L+R VM+ HSKSQ
Sbjct:  513 RVFFEEDVVLTTYPVLSSERLSFQKVRWERVVLDEMQEVRHAKSLLAKTCDKLRCNTRWMVSGTPLYSSVSDLHGELKFLG-ILPFCLPDELDGFWEIRIAKPFSERKRSALELLDLLLRNVMIRHSKSQ 641

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BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC)

HSP 1 Score: 119 bits (299), Expect = 4.960e-28
Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = 1

Query:  121 IADNDVVLTTYELLRTKPS----------------------IFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSL--QNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLII 534
            +ADNDVVL TY  L+ +                        I  ++++ R VLDECQ ++ +TT++A  C  + A  RWMVSGTP+   +D L+GEL FL  VWPF L  Q DGFW  ++G P+ AK+  +L LL AL+R V++ H+K+Q RI +G  +L +
Sbjct:  559 LADNDVVLATYPSLQKEAKKRRRETGTGDGASAPRNERAQKILSRVSWRRVVLDECQMVRSSTTQLAVACRCLVADFRWMVSGTPLHGGVDDLNGELAFLG-VWPFCLSDQTDGFWAHRVGRPWAAKDPDALPLLHALLRGVIVRHTKAQRRIVDGTPLLTL 719

[Close]

BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Match: A0A7S0KTE5_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KTE5_MICPS)

HSP 1 Score: 119 bits (297), Expect = 8.240e-28
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 1

Query:  121 IADNDVVLTTYELLRTK-----------------------PSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVSGTPISSSIDSLHGELNFLQQVWPFSL--QNDGFWEKKIGEPFKAKEDASLDLLRALIRVVMMHHSKSQVRIEEGGGVLII 534
            +ADNDVVL TY  L+ +                         I  ++++ R VLDECQ ++ +TT++A  C  + A  RWMVSGTP+   +D L+GEL FL  VWPF L  Q DGFW  ++G P+ AK+  +L LL AL+R V++ H+K+Q R+ +G  +L +
Sbjct:   89 LADNDVVLATYPSLQKEVKKRRRETGTGDGAAPRPRNERAQKILSRVSWRRVVLDECQMVRSSTTQLAVACRCLVADFRWMVSGTPLHGGVDDLNGELAFLG-VWPFCLSDQTDGFWAHRVGRPWAAKDPDALPLLHALLRGVIVRHTKAQRRLADGTPLLTL 250

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig10033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2K8_ECTSI	1.540e-65	76.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
K8Z7M8_NANGC	2.800e-39	50.00	Snf2 superfamily rad5 protein (Fragment) n=2 Tax=N...	[more]
A0A4D9CZ02_9STRA	7.530e-36	48.92	Helicase ATP-binding domain-containing protein n=1...	[more]
A0A7S3SF79_EMIHU	3.000e-31	50.36	Hypothetical protein n=2 Tax=Emiliania huxleyi Tax...	[more]
A0A7S0NI28_MICPS	2.610e-30	41.98	Hypothetical protein (Fragment) n=1 Tax=Micromonas...	[more]
A0A835Z4V2_9STRA	1.770e-29	50.89	SNF2 family N-terminal domain-containing protein n...	[more]
A0A7S4K2H7_GUITH	1.290e-28	47.69	Hypothetical protein (Fragment) n=1 Tax=Guillardia...	[more]
A0A7S4K2G9_GUITH	1.420e-28	47.69	Hypothetical protein n=1 Tax=Guillardia theta TaxI...	[more]
C1EH46_MICCC	4.960e-28	40.74	SNF2 super family n=1 Tax=Micromonas commoda (stra...	[more]
A0A7S0KTE5_MICPS	8.240e-28	39.88	Hypothetical protein (Fragment) n=1 Tax=Micromonas...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig10033	contig	L-digitata_M_contig10033:1973..8174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7G2K8
PFAMs	HIRAN,Helicase_C,SNF2_N,UBA_4,zf-C3HC4_3,zf-RING_5
Model size	534
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15710,ko:K15711
Hectar predicted targeting category	other localisation
Exons	4
Evalue	2.53e-66
EggNOG OGs	COG0141@1\|root,COG0553@1\|root,KOG1001@2759\|Eukaryota,KOG1002@2759\|Eukaryota
EC	2.3.2.27
Description	pyrimidine dimer repair by nucleotide-excision repair
Cds size	534
COG category	E
BRITE	ko00000,ko01000,ko03400,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406606.1383789-CDS-L-digitata_M_contig10033:1972..2161	1682406606.1383789-CDS-L-digitata_M_contig10033:1972..2161	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10033 1973..2161 +
1682406606.148753-CDS-L-digitata_M_contig10033:6040..6121	1682406606.148753-CDS-L-digitata_M_contig10033:6040..6121	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10033 6041..6121 +
1682406606.158713-CDS-L-digitata_M_contig10033:6688..6775	1682406606.158713-CDS-L-digitata_M_contig10033:6688..6775	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10033 6689..6775 +
1682406606.1706026-CDS-L-digitata_M_contig10033:7997..8174	1682406606.1706026-CDS-L-digitata_M_contig10033:7997..8174	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10033 7998..8174 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig10033.1.1	prot_L-digitata_M_contig10033.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig10033 1973..8174 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig10033:1973..8174+
coding sequence from alignment at L-digitata_M_contig10033:1973..8174+

protein sequence of mRNA_L-digitata_M_contig10033.1.1

>prot_L-digitata_M_contig10033.1.1 ID=prot_L-digitata_M_contig10033.1.1|Name=mRNA_L-digitata_M_contig10033.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=178bp
AGNSTGDGTGNGVGNGSGTGAGNGAAPELVPVEFKVDSRFIADNDVVLTT
YELLRTKPSIFRKINFHRCVLDECQEIKVATTKIAKMCNQVTATHRWMVS
GTPISSSIDSLHGELNFLQQVWPFSLQNDGFWEKKIGEPFKAKEDASLDL
LRALIRVVMMHHSKSQVRIEEGGGVLII

mRNA from alignment at L-digitata_M_contig10033:1973..8174+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig10033.1.1 ID=mRNA_L-digitata_M_contig10033.1.1|Name=mRNA_L-digitata_M_contig10033.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=6202bp|location=Sequence derived from alignment at L-digitata_M_contig10033:1973..8174+ (Laminaria digitata LdigPH10_18mv male)
GCGGGGAACAGTACCGGGGACGGTACCGGGAACGGTGTGGGGAACGGTTC
CGGGACCGGTGCGGGGAACGGCGCTGCACCTGAGTTGGTGCCGGTGGAGT
TCAAGGTGGACTCGCGTTTCATTGCAGACAACGACGTCGTGCTGACCACG
TACGAGCTGCTCCGCACGAAGCCGTCGATATTCCGCAAGGTGATTTCTTG
TTTGTGGTTGTGATGGCGCTGTGGTTTTCGTATTGTTTGCAAAAATCATA
CCATATAATAATTCATGCGTTTTTTTTTTTTGGTAACTTCCTTGACTAAA
TACCATACCAGTATACCCTGGTACTTTTTTACGCGCTCCGTACTTCCGAC
CGTCCTCGGCCTTGAAGAGGCACTCGTTTTCGTCAGATAGAAGGGCCCAC
AGACTGGGCCGGTAGTAAACGTACTAGGGCTGTGAGTGAGTTGGCCGGAC
TTCCCGACTACCTGGTAGTTGTTAGTTGGCTGGCGCCAGCCCACCAACTA
ACTGACTTAGTTGACTAGTTGGCTGGCCTTGTTTGGCTTCTTTTTTAAAT
TATACTGGTAATAAATGTACTTGTGCAATCCTTTACACAAGGAAACCCAA
ATAATCGGATAGTTGGCACCGCTCCAACTAACTATAATACCTACCTGGTA
GCCAACTAATACTAGCTGGCGACTTTTAGCTACCTAACTCACAGCTCTAG
TACTTACTGTATAACACGGAAGAATGCACACCCTTCTTAGATAACACCCC
CCCCCGACATGAGCACACCCGGTGATTTATTTTCTGCTTCGTTAAGAAAG
CACCCCCCCCTTAGATAACACCACAACGCTGTAGCCCGGAGTCCAAGAAT
ATTATTAATAGTGCAAACTACCGGTAGAGGTGTAATGTATACTCATGGTG
TCCACGAAACGGGTGCGGTGCCAGTTGAAGTACACACAGCATGCCTGCGT
TACTGGACGAGTGTACAGCACACGGTGATACTAGTTTTTGTTTCGTTTTC
GACCGTCACTTTATCACCCGTGCATTGTGCTCATCATCCGGGATACCTGG
TACGTTAGATAGCACCCCCCCCCCCCCCACAACAGCACACCCGGTGATAA
TACTTTTTAACGTCAACTTGTTATCACCGGGGTGTGCTTTCTTCCGGGTT
ATACGGTATGGAAGGTAGAATTGCAATAGCGTGTTTGGCACGGTAAAATT
ACCCGAGTACCTACCCGAGTACACGACCCAAACAACAAAGTTTACACAAA
CACCGGACAGATAATCGATTCCCACTTGATGCTCTAGATCTTCGAGGGCG
GATGTATCCCTGATCTGTATGATCTAGCTCGTGCTGCCGGGTTCGAACCA
CGAGTTACTGTAGTGCATATTTCCTGCGTTGGATATATATTCGTATATTC
CTATGTATAGGTAATAGTTTGCTTTGTACACCTCACACCTCTCGTGTTCC
ACAGCTGTCAGATTGTATTATTCCTCTAATATAAGGACTCAATATCCTTC
ACGAGGCCACATAAAACACGTACGAGTAGTGCGCGCGATCGATGTAATCC
CACGCAGCTTGCAAAGATGAGTTAGTTTCGACGAAATCCTCGATCTCATC
ACAGCTGACGTTTTTTTAATTTTATAAATATACTGTACAGATCCTGCACA
ACATCTCTCAGACGGCGGGTTAGGAATCTAGATGGTCTAGATCGTGATCT
GTCCGCCGTGTTAGAGTTTCTCGTACTACCCGGGTATCTCAGAGCACTTA
CCCTAACGATTACACCCGTTGCATCTGGAGTTGTACGTTTTCATCGTATA
TACAGCAAGTACCATGTAAGCTGACGTTGGTGTTGGAGGCCTTGTGGATC
TTCACGTGCGTACGGTTCTCGCCCTTGAGGAGAAGGTCATCGCCTTCCCA
AAGTATGGGTACGCCATTACCTGCTCCTCTAGGCCGAGGACGTTGGCGCA
CGTGAACGCTCGCAAGGCCTCCTATACACCGACGGGTGTTTTTTTGCACT
TGCGGTATGAAAACCTACAATTCCAGGTGTAAACGGGTACCTACCCGACT
ATTTACTATGTACCCGGGTACCTACCCGAGTATGACCAAATCAACAAAGT
TTTTTTGTACCCGGGTATCCCAGCGTACATGTATACCCCTATGAAAGACA
CCGTTTCATCTGGAGTTGTATTATACATATTCATACAGCAAGTACAAATA
GTCTCGCGTTGGTGTTGGGAGACCTTGCGGGCACTCACGTGGGTACGGTC
CTCGGCCTTGAGGAGGTCATGGCCTTTCTGAAGATGGGAGTTCGCGTAGG
CTGGGTCCAGCCTGCGCGAACTTCCATCTTCGTCAACGCCATTACCCGCT
CCTCTAGGCCGAGAACGTTGCGCACGTGAACGCTCGCAAGGCCTCCCACA
CCACAGGGAGGTTATGTGCATTTGCTGTATGTATGCGATCGTACGATTCC
GGATGCAAGGGCGCGTTTGTTAGGGTATGTGCTCTGGGATACTCGGGTAC
CAAGCCTGGTTGATTTTCCTGCAAGGGTGTGTTTCGTAGGGTAAGTGCTC
TGGGATACCCGGGTATCTACCCGAGTATGACCAGAACTACAATTTTTCTG
GTACCCGGGTATCCCAGAGCACATACCCTAACGAACACAACCTTGCATTT
GGAGTTTCACGTTTTCAATACCGGTGTGCGGCAAGTGCAAATAGTCCCAC
GTTGGTGTGGGAAACACTGAGCCTTTTAATGGGTACGGTCCTCGACCTTG
CGGAGAAGGTCGTCGCCTTTCTGAAGATGGAAGTTCATCACTCGCTCCTC
TAGGCCGAGGACGTTGCGCACGTGAACGCTCGCAATGCCTCCAACACCAC
AGGGAGCTTATGTGCATTTGCTCTATGTATGCGATCGTACGATTCCGGAT
ACAAGGGCGCGTTCGTGAGGGTATGTGCTCTGGGATACTCGGGTACCAAG
CCTGGTTGATTTTTTCATTTTTCCTGCAAGGGTGTATTTCGTAGGGTATG
TGCTCTGGGATACCCGGATACAGTACCCGATACCTGGTTGTTTTCGTCAC
ACTTGGGTAGGTACGCGGGCACTCCACCAGGTTATTTACCCTACCAAACA
CACATTTTTCTAAGCCTGTGAGTTGGCTGGACTTCCCGGCTAGGTATGCT
TTGGCTGGCTGAGTGGTCACACGGAGAAATCCGCACTCCGTAGCAAGTAA
GCCTTCTATAACAAGGAAACCCAAATAATCGGATAGCTGGCACCTAACCA
ACTCATGCCTAGCTGGCGAATTCTAGTGATCCAACTCGCAGCTCTAGACA
TTTACTGTATGAAAACGTACAAATTCCAAAGGGTGTGCATTTTGGTTCCA
TGTGTTCTGGACTTGCTTGAAGAATAAGAGTCGACCTTCATTGGCAGACC
TTGTTTGGTTGATCGAGTGAGTGGCACTAACCACCCAGTGGGGTACAGCA
CGGGACTGTGCTGGCAGACTTGTAGAACACGCTAACAGGCGCTGTTGCTT
GCTGCTGTCATCCCCTTGAGAACTGCACCCACGTTTTTGGGACGAAGTAC
TCGAAGTTCGTGTAGGATGGATGCATTGTGCAGTGGTAAACGTTTGATGT
AGCTGGCCAGCAGTTTCTGGGCCAGATATCCCTTGATTTCTTGTTATTCT
TGAGTTTTCATTTTGCTAGTCGGCCTGCGAGTCGGGGAGTAAAAAAATTT
AAGCTCCAGTAGCTCGTGATGCACGGCCTCGCGATGTACGGGTTACATTC
CAAAAACTACCTTCAGCGATGGCATTCCCATTTGTGGATGCGATGCTGCT
TTGTGGCAATTTTTTCCGCCGTACATGCCAATCGAGCTCTTGCTGCCAAG
GGACACGATTACATGTTTACCCTCCCGCACGACCTGTTTCAAGCTTCAAG
CCTCGTTTTGTTTGTTTTTGCGTTGGGGAGTTTTGTTACTGCCTCCTCTC
ATCGAACTCCTAGGGGTTTCCAGTTTCCATGTACAGTAGATAGACCAACC
GACCGACCAACCGAACGACCAACCGTTTCACTCACTCCGCTGCGCGCGAC
GGCTATATGGGAGAGCAGATCAACTTCCACCGCTGCGTGCTGGACGAGTG
CCAGGAGATCAAGGTGGCGACGACCAAGATCGCCAAGATGTGCAACCAGG
TGAGCGTGAGCGTGTATGTGTGTCTGTCCATGATTTTTATGCGTATGAGT
TTGGGTGTTTGTTGTTGTTGTTGTGTCGTTGTGACCTCTCGTGTCCCACC
CTCTCTACCACCCTCCCCACCCGCCCACCCACCCACCCACCCGCCCACCC
TCCAACACACCTACTCGCCAACCCACCCACGCACCCATCCACCCACCCAC
CCACCCATCCACCCACCACGCACCCATCACTCACTCGCTCGCCCGCTCAG
TCACTTCACTTACTCACGCACTCACTCACCTACTCCTACCCACTCACCTA
CCCACCCACCCACCCACCCACACCACCCGCCCGCCCACCCACTCACCCGC
CCACCCACCCATCCGCCCACCTACCCATCCATTCGTCAGCCCGCCCCGCC
GATCCATCGAACGTTCAATCGAACGTTCGATATCGCGTCCCTCTTTTGCG
GAATTAAATAGTTACAATCAACCCCCCATAGTCTATTATATACATATAAT
ACCAGGTACAATATTTTATGTTTTCATTGCACCAAAATATGTCAACGTCG
TTGCTCTCGCTCGCAGGTTACGGCCACCCATCGCTGGATGGTTTCCGGAA
CGCCCATCTCATCCAGCATCGACAGCCTGCACGGCGAGCTGAACTTCCTT
CAGGTGACATGACCACTTAACGCGTGCTACGACACGACAGGGGTGTACGT
ACGCCTGTAGCATTTTTTTTTGGCGATTTTTTTTTTTTCTGACGGACGTG
GCTTCTCAACTGAGGCGTTACAGCAGTGGTGTTACCCATTTTTAAGACCA
TCCGGTTCAAGGCCATGTTGGAGATAAGACCAGGTAAATCGGCTTTTGAC
ACGAAAGAACAGATCACTTGGAATTAGTATGAGCAGTTTGTAGCTAACGA
TTAAGACCAAACGTAGAGATAAGATAAGATACCTATAGCGGCTGGACTAT
GTACTGCAGCAACCCCGATCAAACGCATGACCGGCATCGCGCGATCCCCT
GGGTGGTCTTATAATACAATGGGTACACCACTGTGTACCTAATATCGCCG
GCACTCTCAATCTGCCCAATATCATCTGTGTGTTATGATAACCTAGGCCA
TGGGTTTCGTCGGGCTTCAGTTTTTTATTTTTTTTATTTTATTGAGCTCC
TCGAGCGAGAACCCTAAAAAAATGTGACTGACACCCTTATCGTACAGTAA
CATGCATCATACAATAACATGCATCACTTTAAAACATCGGACAGATCGTC
GGTTCCCACCGCGTGATCTAGATCGTTCAGGGCAGACAGATAGATTCCTG
ATCTGCATGATCTGTAGCTCATGTCGCCGGGTGGGAGCCCCCTGTAATCT
GCAATGATTCTACTCGTACAGTAAGTAGCACGTGTTTTCCCTGGGGTTGG
ATCTGTGTGTCAAACAGATCCTGCACAACCATCTCAAAACGGCGGGTTAG
GATCTACAATGGTTGATCTAGATCGTGATCTGTCCGACGTGTGCTACAAT
ACTGCTACTACTACTATTGTAGTATAACAGTTTAGCTATCTGCAACTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCATGTGGAACACAACCAACCGCGCT
TGTTTGTCTTCAATAGCTACAATGGAGTGTGCGAAAAAAACATTTTCATT
TCTCCAATTCAGCCTAAAAAGCAACCGGAATGAAACAATTTGCAAGGGCT
GTCCTCGGTAACAATTATAACCGCGGCACAACCACGGTTGTTGGTAACAA
CTGTGGTTCCGTGGAATACCGTGATTTCCGTTTTTTTGTCGTCGTCGTCG
TCGTCGTCCCTTTTCCCTTTACGTACGTATTGTGTTTTCCCTTTTATGTC
GTTACTTTTGGTGAATGCGAGCGAGCAGGTCTGGCCCTTCAGCCTCCAGA
ACGACGGGTTCTGGGAGAAAAAGATCGGCGAGCCGTTTAAGGCCAAGGAG
GACGCCTCCTTAGACCTCCTGCGGGCGCTCATCCGTGTCGTCATGATGCA
CCACTCCAAGTCACAGGTGCGAATTGAGGAGGGGGGAGGTGTACTCATAA
TC

Coding sequence (CDS) from alignment at L-digitata_M_contig10033:1973..8174+

>mRNA_L-digitata_M_contig10033.1.1 ID=mRNA_L-digitata_M_contig10033.1.1|Name=mRNA_L-digitata_M_contig10033.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=534bp|location=Sequence derived from alignment at L-digitata_M_contig10033:1973..8174+ (Laminaria digitata LdigPH10_18mv male)
GCGGGGAACAGTACCGGGGACGGTACCGGGAACGGTGTGGGGAACGGTTC
CGGGACCGGTGCGGGGAACGGCGCTGCACCTGAGTTGGTGCCGGTGGAGT
TCAAGGTGGACTCGCGTTTCATTGCAGACAACGACGTCGTGCTGACCACG
TACGAGCTGCTCCGCACGAAGCCGTCGATATTCCGCAAGATCAACTTCCA
CCGCTGCGTGCTGGACGAGTGCCAGGAGATCAAGGTGGCGACGACCAAGA
TCGCCAAGATGTGCAACCAGGTTACGGCCACCCATCGCTGGATGGTTTCC
GGAACGCCCATCTCATCCAGCATCGACAGCCTGCACGGCGAGCTGAACTT
CCTTCAGCAGGTCTGGCCCTTCAGCCTCCAGAACGACGGGTTCTGGGAGA
AAAAGATCGGCGAGCCGTTTAAGGCCAAGGAGGACGCCTCCTTAGACCTC
CTGCGGGCGCTCATCCGTGTCGTCATGATGCACCACTCCAAGTCACAGGT
GCGAATTGAGGAGGGGGGAGGTGTACTCATAATC