prot_L-digitata_M_contig1002.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig1002.1.1
Unique Nameprot_L-digitata_M_contig1002.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length402
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig1002.1.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.660e-15
Identity = 57/127 (44.88%), Postives = 67/127 (52.76%), Query Frame = 0 
Query:  166 TVIPEAIPGVIPENMTLAHFYDAHANEVSAWRERVQAEKSAKQEKRKRAVDEQRVXXXXXXXXXXXXRRVSIEGIVDTTYLKWMRMVPKSAKKFVSKLSAEDSVAAVAVVNANADLSAETHEILLTP 292
            TV+P+AI GVIPE+MTLA+   AHA+++                                            E +V T+YLKW   VPKSAKKFVSKLSAEDSV AV VV ANADLS E  + LLTP
Sbjct:  957 TVVPKAIHGVIPESMTLAYLTKAHADKI--------------------------------------------ESMVGTSYLKWTHTVPKSAKKFVSKLSAEDSVIAVVVVRANADLSDEKRQSLLTP 1039
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFA9_9PHAE3.660e-1544.88SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 331..351
NoneNo IPR availableCOILSCoilCoilcoord: 197..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1002contigL-digitata_M_contig1002:440..1645 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1002.1.1mRNA_L-digitata_M_contig1002.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig1002 2..2251 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig1002.1.1 ID=prot_L-digitata_M_contig1002.1.1|Name=mRNA_L-digitata_M_contig1002.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=402bp
MFVHIVTIMNTNMRSLSTINMLADVNIDLVTAFLPDAKSMALFARASQRL
KSVVYRNIPAAIKAARHKLTKFQRETIGNLGENPGIGHLKALVERKCIVC
KKSYKGGIRAPWGIPAHPECTKGLETNVRYLNAGIPTELMPLVRSTIPVN
VRGGYSSHHGQYEYETVIPEAIPGVIPENMTLAHFYDAHANEVSAWRERV
QAEKSAKQEKRKRAVDEQRVARQKKQKVLNEERRVSIEGIVDTTYLKWMR
MVPKSAKKFVSKLSAEDSVAAVAVVNANADLSAETHEILLTPGCTRPCVT
ELTSAYALVRRLGEEAIILLRRHHCVSTVRAELIARERADQRREAREMLR
EDKEDKYTPYISCIPNTFRGRQCRCGKTSAKSCAFNMCGGCCPKGACFRH
R*
back to top