mRNA_L-digitata_M_contig1002.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1002.1.1
Unique NamemRNA_L-digitata_M_contig1002.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig1002.1.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.690e-14
Identity = 57/127 (44.88%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:  934 TVIPEAIPGVIPENMTLAHFYDAHANEVSAWRERVQAEKSAKQEKRKRAVDEQRVXXXXXXXXXXXXRRVSIEGIVDTTYLKWMRMVPKSAKKFVSKLSAEDSVAAVAVVNANADLSAETHEILLTP 1314
            TV+P+AI GVIPE+MTLA+   AHA+++                                            E +V T+YLKW   VPKSAKKFVSKLSAEDSV AV VV ANADLS E  + LLTP
Sbjct:  957 TVVPKAIHGVIPESMTLAYLTKAHADKI--------------------------------------------ESMVGTSYLKWTHTVPKSAKKFVSKLSAEDSVIAVVVVRANADLSDEKRQSLLTP 1039
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFA9_9PHAE2.690e-1444.88SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1002contigL-digitata_M_contig1002:2..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2250
Hectar predicted targeting categoryother localisation
Exons1
Cds size1206
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.5319521-UTR-L-digitata_M_contig1002:1..4391682406604.5319521-UTR-L-digitata_M_contig1002:1..439Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1002 2..439 +
1682406604.561083-UTR-L-digitata_M_contig1002:1645..22511682406604.561083-UTR-L-digitata_M_contig1002:1645..2251Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1002 1646..2251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.543823-CDS-L-digitata_M_contig1002:439..16451682406604.543823-CDS-L-digitata_M_contig1002:439..1645Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1002 440..1645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1002.1.1prot_L-digitata_M_contig1002.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1002 440..1645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1002.1.1

>prot_L-digitata_M_contig1002.1.1 ID=prot_L-digitata_M_contig1002.1.1|Name=mRNA_L-digitata_M_contig1002.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=402bp
MFVHIVTIMNTNMRSLSTINMLADVNIDLVTAFLPDAKSMALFARASQRL
KSVVYRNIPAAIKAARHKLTKFQRETIGNLGENPGIGHLKALVERKCIVC
KKSYKGGIRAPWGIPAHPECTKGLETNVRYLNAGIPTELMPLVRSTIPVN
VRGGYSSHHGQYEYETVIPEAIPGVIPENMTLAHFYDAHANEVSAWRERV
QAEKSAKQEKRKRAVDEQRVARQKKQKVLNEERRVSIEGIVDTTYLKWMR
MVPKSAKKFVSKLSAEDSVAAVAVVNANADLSAETHEILLTPGCTRPCVT
ELTSAYALVRRLGEEAIILLRRHHCVSTVRAELIARERADQRREAREMLR
EDKEDKYTPYISCIPNTFRGRQCRCGKTSAKSCAFNMCGGCCPKGACFRH
R*
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mRNA from alignment at L-digitata_M_contig1002:2..2251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1002.1.1 ID=mRNA_L-digitata_M_contig1002.1.1|Name=mRNA_L-digitata_M_contig1002.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2250bp|location=Sequence derived from alignment at L-digitata_M_contig1002:2..2251+ (Laminaria digitata LdigPH10_18mv male)
GGGTTGCATGAGGTTACCAGACGCTCGGGGGTCAGCAACGAGAGGTAATC
GCAGAGGGCGCCCGAGGGGCCAGGAAGGCCTTGAAGGATTGTAGTGATAA
CGAGGCGGTACGATCTATATAGGGGATAGGACCTGGTATCCACATTGTTT
TGTTTATTTTTTTGTCGAGCCAACTCGTGCTCTACCTAACTCTTTCTCAA
ATTGCGCAATCGCGTCCGAAGTTTCTCTCGCGAAAGCATAAAGGCCCTGT
TATAATACTCTCTGGTTTATCAGTTCCTTTTCCAGCGCTTCGACCCGCCC
GACGGTCGCGTCGCGTTCGTTTTTCAGTTTTTGTAAATCGCCTTGTAACA
TCCTGAGCTCTTCGCGCACGTAGTCCGCCTTCGACACAACAGGACCCATT
TGCCGCGTTTGCCCTTTTGCGTGGCGGTGGATCTGAAAATGTTTGTTCAC
ATTGTAACAATTATGAATACAAATATGCGCTCACTTTCCACAATCAACAT
GCTCGCAGACGTGAACATCGACCTGGTAACTGCCTTCCTACCCGATGCCA
AGTCCATGGCCTTGTTCGCGAGAGCGTCCCAGCGCTTAAAAAGCGTAGTC
TACCGCAACATCCCGGCCGCTATAAAAGCTGCCAGGCACAAACTGACAAA
GTTCCAGAGAGAAACGATTGGTAATCTCGGCGAGAACCCGGGCATCGGAC
ACCTCAAGGCTCTCGTCGAGCGCAAATGCATCGTTTGCAAGAAAAGTTAC
AAAGGAGGGATTCGCGCGCCATGGGGAATCCCGGCGCACCCGGAGTGCAC
CAAGGGCCTCGAGACCAACGTGCGCTACCTCAACGCCGGTATACCGACCG
AGCTGATGCCTCTCGTCCGATCGACGATACCGGTCAACGTCAGGGGCGGA
TACAGCTCGCATCATGGTCAGTACGAGTACGAGACAGTTATCCCCGAGGC
CATCCCCGGCGTCATCCCCGAAAACATGACACTTGCGCACTTCTACGACG
CTCACGCGAACGAGGTCAGCGCTTGGCGTGAGCGAGTGCAGGCGGAGAAG
AGCGCCAAACAAGAGAAGCGCAAACGAGCGGTCGATGAGCAGCGGGTCGC
ACGGCAGAAGAAGCAGAAGGTCTTGAACGAAGAACGCAGGGTGTCGATCG
AGGGCATCGTGGACACCACGTACCTAAAATGGATGCGCATGGTCCCGAAG
AGCGCGAAGAAGTTCGTGTCGAAACTGTCCGCGGAGGACAGCGTGGCCGC
GGTGGCCGTGGTCAACGCCAACGCTGATCTGTCTGCCGAGACGCACGAGA
TTTTGCTGACGCCTGGATGTACACGGCCTTGTGTGACAGAACTGACCAGC
GCCTACGCCTTGGTTCGTAGACTCGGCGAAGAAGCAATAATTCTTCTCCG
CCGCCACCACTGCGTGTCCACCGTCCGCGCCGAGCTCATCGCGCGCGAAC
GGGCTGACCAGAGGCGCGAGGCTCGCGAGATGTTGAGGGAAGACAAAGAA
GACAAGTACACCCCGTACATTTCGTGCATTCCGAATACTTTCAGAGGAAG
ACAGTGTCGGTGTGGTAAGACAAGTGCAAAAAGTTGCGCTTTTAACATGT
GTGGCGGCTGTTGCCCGAAGGGCGCTTGTTTTAGACACCGTTGATTGATA
TTTATCGTATACATTTGTTTTTGATTTGCGCCGCACTCGTGTTACATTTC
TGCACCATGGCTTCCGTCGTCTGCTGCGCGACTTTCGGAGTCAAGTACCG
TAAGAGGGGCGGCGGCTGCAAGGTCCTGAACGACACATCGGTCCAAGTTT
CGGACACGGACCTGTACCTCAACAAGATACAGAACCGGCCCGCACTTTAA
AACGGCTTATTTTGCGTAAGGCTCGAGGCCTATTGGTCACCGCAACCCCA
GCACGTGTTCTTATTTGGCAGGTTCTTATTTCGACCAGGCATTCGTCGCC
AAAAACGGGGGTTCTTGTTCTTATCTCATCGTCTAGTCCATAGGTACATG
ACAACGTTCTTGGCTCGCAAATATCGGAGTGAAAGCCCCGGGGAGGGGAT
TTTTGTTTTTCGTGAATGTACAACCCCGGGGGGGAAATCCAAAAAGGGGG
GGGCGATCTTTTTGATTTGTCAACTGTACCAGGGGAGGGGGTCAAAGGAT
CTCGCAGCCGCTCTTACGCCCTACAACCCGGACGAAGGCTCTGACGAGGA
AAAGGCGTTGACGACTTGGCAGCGGAGGAGGGATCAGAGGAAAAATAATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig1002:2..2251+

>mRNA_L-digitata_M_contig1002.1.1 ID=mRNA_L-digitata_M_contig1002.1.1|Name=mRNA_L-digitata_M_contig1002.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1206bp|location=Sequence derived from alignment at L-digitata_M_contig1002:2..2251+ (Laminaria digitata LdigPH10_18mv male)
ATGTTTGTTCACATTGTAACAATTATGAATACAAATATGCGCTCACTTTC
CACAATCAACATGCTCGCAGACGTGAACATCGACCTGGTAACTGCCTTCC
TACCCGATGCCAAGTCCATGGCCTTGTTCGCGAGAGCGTCCCAGCGCTTA
AAAAGCGTAGTCTACCGCAACATCCCGGCCGCTATAAAAGCTGCCAGGCA
CAAACTGACAAAGTTCCAGAGAGAAACGATTGGTAATCTCGGCGAGAACC
CGGGCATCGGACACCTCAAGGCTCTCGTCGAGCGCAAATGCATCGTTTGC
AAGAAAAGTTACAAAGGAGGGATTCGCGCGCCATGGGGAATCCCGGCGCA
CCCGGAGTGCACCAAGGGCCTCGAGACCAACGTGCGCTACCTCAACGCCG
GTATACCGACCGAGCTGATGCCTCTCGTCCGATCGACGATACCGGTCAAC
GTCAGGGGCGGATACAGCTCGCATCATGGTCAGTACGAGTACGAGACAGT
TATCCCCGAGGCCATCCCCGGCGTCATCCCCGAAAACATGACACTTGCGC
ACTTCTACGACGCTCACGCGAACGAGGTCAGCGCTTGGCGTGAGCGAGTG
CAGGCGGAGAAGAGCGCCAAACAAGAGAAGCGCAAACGAGCGGTCGATGA
GCAGCGGGTCGCACGGCAGAAGAAGCAGAAGGTCTTGAACGAAGAACGCA
GGGTGTCGATCGAGGGCATCGTGGACACCACGTACCTAAAATGGATGCGC
ATGGTCCCGAAGAGCGCGAAGAAGTTCGTGTCGAAACTGTCCGCGGAGGA
CAGCGTGGCCGCGGTGGCCGTGGTCAACGCCAACGCTGATCTGTCTGCCG
AGACGCACGAGATTTTGCTGACGCCTGGATGTACACGGCCTTGTGTGACA
GAACTGACCAGCGCCTACGCCTTGGTTCGTAGACTCGGCGAAGAAGCAAT
AATTCTTCTCCGCCGCCACCACTGCGTGTCCACCGTCCGCGCCGAGCTCA
TCGCGCGCGAACGGGCTGACCAGAGGCGCGAGGCTCGCGAGATGTTGAGG
GAAGACAAAGAAGACAAGTACACCCCGTACATTTCGTGCATTCCGAATAC
TTTCAGAGGAAGACAGTGTCGGTGTGGTAAGACAAGTGCAAAAAGTTGCG
CTTTTAACATGTGTGGCGGCTGTTGCCCGAAGGGCGCTTGTTTTAGACAC
CGTTGA
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