mRNA_L-digitata_M_contig99944.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99944.1.1
Unique NamemRNA_L-digitata_M_contig99944.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99944.1.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-7
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:    1 GDVTGVLDIAKCLYDAVTRLQRVAGRKSM 87
            GDVTG+LDIAKCLYDAV+RLQR A RKS+
Sbjct: 1599 GDVTGILDIAKCLYDAVSRLQRTAKRKSV 1627
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BLAST of mRNA_L-digitata_M_contig99944.1.1 vs. uniprot
Match: A0A836CBL7_9STRA (Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL7_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.060e-5
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 GDVTGVLDIAKCLYDAVTRLQRVAGRKS 84
            G VTGVLDIAKCLYDA+TRL+RV  ++S
Sbjct: 1597 GAVTGVLDIAKCLYDAITRLERVMAKQS 1624
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6N9_ECTSI3.680e-782.76Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A836CBL7_9STRA4.060e-575.00Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99944contigL-digitata_M_contig99944:585..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.04e-08
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size117
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.5110536-CDS-L-digitata_M_contig99944:584..7011682408659.5110536-CDS-L-digitata_M_contig99944:584..701Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99944 585..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99944.1.1prot_L-digitata_M_contig99944.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99944 585..701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99944.1.1

>prot_L-digitata_M_contig99944.1.1 ID=prot_L-digitata_M_contig99944.1.1|Name=mRNA_L-digitata_M_contig99944.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=39bp
GDVTGVLDIAKCLYDAVTRLQRVAGRKSMGGSSDDGSDE
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mRNA from alignment at L-digitata_M_contig99944:585..701-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99944.1.1 ID=mRNA_L-digitata_M_contig99944.1.1|Name=mRNA_L-digitata_M_contig99944.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig99944:585..701- (Laminaria digitata LdigPH10_18mv male)
GGAGATGTGACGGGAGTCCTGGACATCGCGAAGTGCCTGTACGACGCCGT
CACACGTCTCCAGCGCGTCGCCGGGAGAAAGTCCATGGGAGGGAGCAGCG
ACGACGGAAGCGATGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99944:585..701-

>mRNA_L-digitata_M_contig99944.1.1 ID=mRNA_L-digitata_M_contig99944.1.1|Name=mRNA_L-digitata_M_contig99944.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig99944:585..701- (Laminaria digitata LdigPH10_18mv male)
GGAGATGTGACGGGAGTCCTGGACATCGCGAAGTGCCTGTACGACGCCGT
CACACGTCTCCAGCGCGTCGCCGGGAGAAAGTCCATGGGAGGGAGCAGCG
ACGACGGAAGCGATGAG
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