mRNA_L-digitata_M_contig9994.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9994.1.1
Unique NamemRNA_L-digitata_M_contig9994.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9994.1.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.280e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   28 QVARCEMDSDFLAKASSHMEKALRQDYGGKPTPTPPP 138
            +VA+CEMDSDFLAKA+SH+EKA  QDYG     T PP
Sbjct:  683 EVAKCEMDSDFLAKAASHVEKACMQDYGASDMTTLPP 719
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BLAST of mRNA_L-digitata_M_contig9994.1.1 vs. uniprot
Match: A0A3L6V9I7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V9I7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.830e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 VADRRGMADQVARCEMDSDFLAKASSHMEKALRQDYGGKPTPTP 132
            VA R  M  + A+CEM+ D+LAKAS H+ KAL+ DYGG PT  P
Sbjct:  531 VALRAQMHFEAAKCEMECDYLAKASVHVNKALQLDYGGTPTEQP 574
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BLAST of mRNA_L-digitata_M_contig9994.1.1 vs. uniprot
Match: W4H7H1_9STRA (FHA domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7H1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.190e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 VADRRGMADQVARCEMDSDFLAKASSHMEKALRQDYGGKPTPTP 132
            VA R  M  + A+CEM+ D+LAKAS H+ KAL+ DYGG PT  P
Sbjct:  536 VALRAQMHFESAKCEMECDYLAKASVHVNKALQLDYGGTPTEQP 579
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BLAST of mRNA_L-digitata_M_contig9994.1.1 vs. uniprot
Match: A0A485KQ62_9STRA (Aste57867_10079 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ62_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.840e-5
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 VADRRGMADQVARCEMDSDFLAKASSHMEKALRQDYGGKPTPTPPPSPG 147
            VA R  M  + A+CEM+SD+LAKAS+H+ KAL  DYGG   P P  S G
Sbjct:  518 VALRAQMHFETAKCEMESDYLAKASTHVNKALALDYGG---PKPAESKG 563
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G359_ECTSI4.280e-767.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3L6V9I7_9STRA3.830e-656.82Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H7H1_9STRA7.190e-656.82FHA domain-containing protein n=8 Tax=Aphanomyces ... [more]
A0A485KQ62_9STRA1.840e-555.10Aste57867_10079 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9994contigL-digitata_M_contig9994:893..1060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G359
Preferred nameCFAP46
PFAMsPeptidase_C50
Model size168
Max annot lvl2759|Eukaryota
KEGG koko:K18626
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue3.93e-08
EggNOG OGs2C6EK@1|root,2QS2Z@2759|Eukaryota
Descriptioncilium movement involved in cell motility
Cds size150
COG categoryS
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.4250972-UTR-L-digitata_M_contig9994:892..9101682408659.4250972-UTR-L-digitata_M_contig9994:892..910Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9994 893..910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.4420352-CDS-L-digitata_M_contig9994:910..10601682408659.4420352-CDS-L-digitata_M_contig9994:910..1060Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9994 911..1060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9994.1.1prot_L-digitata_M_contig9994.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9994 911..1060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9994.1.1

>prot_L-digitata_M_contig9994.1.1 ID=prot_L-digitata_M_contig9994.1.1|Name=mRNA_L-digitata_M_contig9994.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
MADQVARCEMDSDFLAKASSHMEKALRQDYGGKPTPTPPPSPGKIRTKR*
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mRNA from alignment at L-digitata_M_contig9994:893..1060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9994.1.1 ID=mRNA_L-digitata_M_contig9994.1.1|Name=mRNA_L-digitata_M_contig9994.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig9994:893..1060+ (Laminaria digitata LdigPH10_18mv male)
GTTGCGGACCGACGTGGGATGGCCGATCAGGTGGCCAGGTGCGAGATGGA
CTCAGATTTCCTCGCGAAGGCCTCCTCCCACATGGAAAAGGCGTTACGGC
AGGATTACGGAGGTAAGCCAACCCCCACGCCCCCCCCTTCCCCTGGAAAA
ATACGCACGAAGCGGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig9994:893..1060+

>mRNA_L-digitata_M_contig9994.1.1 ID=mRNA_L-digitata_M_contig9994.1.1|Name=mRNA_L-digitata_M_contig9994.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig9994:893..1060+ (Laminaria digitata LdigPH10_18mv male)
ATGGCCGATCAGGTGGCCAGGTGCGAGATGGACTCAGATTTCCTCGCGAA
GGCCTCCTCCCACATGGAAAAGGCGTTACGGCAGGATTACGGAGGTAAGC
CAACCCCCACGCCCCCCCCTTCCCCTGGAAAAATACGCACGAAGCGGTAA
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