mRNA_L-digitata_M_contig99784.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99784.1.1
Unique NamemRNA_L-digitata_M_contig99784.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99784.1.1 vs. uniprot
Match: A0A1M3NAJ5_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NAJ5_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 3.660e-5
Identity = 47/173 (27.17%), Postives = 76/173 (43.93%), Query Frame = 1 
Query:    4 PQRTHVTGTVLSRFGSPVS-AALLELRPLSPDGRP---------GDAITDVDGSFEVDLDPGPYLLVIRPRGATSSGELV-------PVTAQTIEVVQQARQGLDLITVSLGSSLSWVVRG-GPQGTTLPGTRAELFVT---------VAGQVVSLGRSESDADGVCTIVVPQ 441
            P RT V G  +   G  +S A ++ +   SP+ RP         G  +TD DG FE+++DPGPY+L + P+  T    +V        +TAQ  E+          I V   + L++ +R   P G  +      +F T         V    V +G + +D++G   I++ Q
Sbjct:  438 PLRTRVKGRAVLTDGRALSDAEVVAIPNTSPEARPSPMFAQPRPGRTLTDDDGRFELEVDPGPYVLSVIPKAGTGFPRVVVRPEIPGSLTAQEAELAD--------IRVPAPTRLAFTLRDPSPTGNPIARAVVRVFATPAVPGGGAGVVPDPVEIGSAMTDSEGFVEILLAQ 602
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99784.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1M3NAJ5_9DELT3.660e-527.17Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99784contigL-digitata_M_contig99784:496..942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog391625.PPSIR1_20349
PFAMsCarboxypepD_reg,PDZ_2
Model size447
Max annot lvl2|Bacteria
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000464
EggNOG OGsCOG4932@1|root,COG4932@2|Bacteria
Descriptiondomain protein
Cds size447
COG categoryM
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.8958545-CDS-L-digitata_M_contig99784:495..9421682408657.8958545-CDS-L-digitata_M_contig99784:495..942Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99784 496..942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99784.1.1prot_L-digitata_M_contig99784.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99784 496..942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99784.1.1

>prot_L-digitata_M_contig99784.1.1 ID=prot_L-digitata_M_contig99784.1.1|Name=mRNA_L-digitata_M_contig99784.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=149bp
LPQRTHVTGTVLSRFGSPVSAALLELRPLSPDGRPGDAITDVDGSFEVDL
DPGPYLLVIRPRGATSSGELVPVTAQTIEVVQQARQGLDLITVSLGSSLS
WVVRGGPQGTTLPGTRAELFVTVAGQVVSLGRSESDADGVCTIVVPQR*
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mRNA from alignment at L-digitata_M_contig99784:496..942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99784.1.1 ID=mRNA_L-digitata_M_contig99784.1.1|Name=mRNA_L-digitata_M_contig99784.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=447bp|location=Sequence derived from alignment at L-digitata_M_contig99784:496..942- (Laminaria digitata LdigPH10_18mv male)
CTGCCCCAGCGCACCCACGTCACGGGAACCGTCCTGTCCCGCTTTGGAAG
CCCCGTGTCTGCGGCCCTGCTTGAGCTGCGCCCCCTCAGTCCCGATGGGC
GGCCCGGTGATGCCATCACCGATGTCGACGGCAGCTTCGAGGTGGACCTC
GATCCTGGCCCCTACCTGCTCGTGATCCGCCCCCGCGGCGCCACCAGCTC
CGGCGAGCTGGTGCCCGTGACCGCCCAGACCATCGAGGTCGTGCAGCAAG
CCCGTCAGGGCCTGGACCTCATCACGGTGTCCTTGGGGTCTTCTTTGAGC
TGGGTGGTGCGTGGTGGGCCTCAGGGCACGACCTTGCCCGGCACCCGCGC
GGAGCTCTTCGTGACCGTCGCCGGCCAGGTCGTCTCGCTGGGGCGCAGCG
AGAGCGACGCCGACGGGGTCTGCACCATCGTCGTACCCCAGCGCTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99784:496..942-

>mRNA_L-digitata_M_contig99784.1.1 ID=mRNA_L-digitata_M_contig99784.1.1|Name=mRNA_L-digitata_M_contig99784.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=447bp|location=Sequence derived from alignment at L-digitata_M_contig99784:496..942- (Laminaria digitata LdigPH10_18mv male)
CTGCCCCAGCGCACCCACGTCACGGGAACCGTCCTGTCCCGCTTTGGAAG
CCCCGTGTCTGCGGCCCTGCTTGAGCTGCGCCCCCTCAGTCCCGATGGGC
GGCCCGGTGATGCCATCACCGATGTCGACGGCAGCTTCGAGGTGGACCTC
GATCCTGGCCCCTACCTGCTCGTGATCCGCCCCCGCGGCGCCACCAGCTC
CGGCGAGCTGGTGCCCGTGACCGCCCAGACCATCGAGGTCGTGCAGCAAG
CCCGTCAGGGCCTGGACCTCATCACGGTGTCCTTGGGGTCTTCTTTGAGC
TGGGTGGTGCGTGGTGGGCCTCAGGGCACGACCTTGCCCGGCACCCGCGC
GGAGCTCTTCGTGACCGTCGCCGGCCAGGTCGTCTCGCTGGGGCGCAGCG
AGAGCGACGCCGACGGGGTCTGCACCATCGTCGTACCCCAGCGCTAG
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