mRNA_L-digitata_M_contig99685.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99685.2.1
Unique NamemRNA_L-digitata_M_contig99685.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A4U2NQA1_BACCE (Urocanate hydratase (Fragment) n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A4U2NQA1_BACCE)

HSP 1 Score: 169 bits (429), Expect = 1.750e-52
Identity = 80/97 (82.47%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVP 291
            TEAMKDGSDAVADWPILNA+IN+VNGASWVS HHGGGVG+GYSLHAGMVIVADGTE AA R++RVLTSDPGMGV+RHVDAGYD AV+ A E+ V++P
Sbjct:   36 TEAMKDGSDAVADWPILNALINSVNGASWVSVHHGGGVGMGYSLHAGMVIVADGTEAAAKRIERVLTSDPGMGVVRHVDAGYDLAVETAKEKGVNIP 132
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BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A061PFY0_9BACL (Urocanate hydratase n=1 Tax=Geomicrobium sp. JCM 19039 TaxID=1460636 RepID=A0A061PFY0_9BACL)

HSP 1 Score: 167 bits (422), Expect = 1.210e-50
Identity = 77/101 (76.24%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGLNR 303
            TE+MKDGSDAVADWPILNAMIN+V GASWVS HHGGGVG+GYSLHAGMVIVADGT+ A ARL+RVLT+DPGMG++RHVDAGYDEA+D A    +++P L++
Sbjct:   92 TESMKDGSDAVADWPILNAMINSVGGASWVSVHHGGGVGMGYSLHAGMVIVADGTKDAEARLERVLTTDPGMGIVRHVDAGYDEAIDAAKRHKMNIPMLDQ 192
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BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A356TQ99_9DELT (Urocanate hydratase (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356TQ99_9DELT)

HSP 1 Score: 167 bits (423), Expect = 3.070e-50
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVP 291
            TE MKDGSDA+ADWPILNA+INA  GA+W+S HHGGGVGIGYS+HAGMVIVADGTE A  RL+RVLTSDPGMGVIRH DAGYDEA+ CA ++ VHVP
Sbjct:  136 TEGMKDGSDAIADWPILNALINASGGATWISVHHGGGVGIGYSIHAGMVIVADGTEAADKRLERVLTSDPGMGVIRHADAGYDEAIACAKDKGVHVP 232
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BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: UPI001BB31BED (urocanate hydratase n=1 Tax=Bacillus paramobilis TaxID=2817477 RepID=UPI001BB31BED)

HSP 1 Score: 169 bits (429), Expect = 3.130e-50
Identity = 80/97 (82.47%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVP 291
            TEAMKDGSDAVADWPILNA+IN+VNGASWVS HHGGGVG+GYSLHAGMVIVADGTE AA R++RVLTSDPGMGV+RHVDAGYD AV+ A E+ V++P
Sbjct:  212 TEAMKDGSDAVADWPILNALINSVNGASWVSVHHGGGVGMGYSLHAGMVIVADGTEAAAKRIERVLTSDPGMGVVRHVDAGYDLAVETAKEKGVNIP 308
[Close]
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A534W5G6_9DELT (Urocanate hydratase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534W5G6_9DELT)

HSP 1 Score: 174 bits (441), Expect = 7.960e-50
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGLNR 303
            TEAMKDGSDA+ADWPILNA++NAVNGASWVSFHHGGGVGIGYSLHAG VIVADGT+ AA RL+RVLTSDP MG++RH DAGY+EA+  A ER V +PGL R
Sbjct:  451 TEAMKDGSDAIADWPILNALVNAVNGASWVSFHHGGGVGIGYSLHAGQVIVADGTDAAARRLERVLTSDPAMGILRHADAGYEEAIQVARERGVQIPGLTR 551
[Close]
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A534Y993_9DELT (Urocanate hydratase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Y993_9DELT)

HSP 1 Score: 174 bits (441), Expect = 8.340e-50
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGLNR 303
            TEAMKDGSDA+ADWPILNA++NAVNGASWVSFHHGGGVG+GYSLHAG VIVADGTE AA RL+RVLTSDP MG++RH DAGY+EA+  A ER V +PGL R
Sbjct:  451 TEAMKDGSDAIADWPILNALVNAVNGASWVSFHHGGGVGMGYSLHAGQVIVADGTEAAARRLERVLTSDPAMGILRHADAGYEEAIQVARERGVQIPGLTR 551
[Close]
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: UPI001ADCD25C (urocanate hydratase n=1 Tax=Bacillus sp. 165 TaxID=1529117 RepID=UPI001ADCD25C)

HSP 1 Score: 174 bits (440), Expect = 1.130e-49
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGLN 300
            TEAMKDGSDAVADWPILNA+IN VNGASWVS HHGGGVG+GYSLH+GMVIVADGTEKAA RL+RVLTSDPGMGV+RHVDAGYD AV  A E+ VH+P ++
Sbjct:  453 TEAMKDGSDAVADWPILNALINGVNGASWVSLHHGGGVGMGYSLHSGMVIVADGTEKAAKRLERVLTSDPGMGVVRHVDAGYDLAVQTAKEKGVHIPMMD 552
[Close]
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A2M6ZYW9_9DELT (Urocanate hydratase (Fragment) n=1 Tax=Deltaproteobacteria bacterium CG07_land_8_20_14_0_80_38_7 TaxID=1973971 RepID=A0A2M6ZYW9_9DELT)

HSP 1 Score: 167 bits (422), Expect = 4.030e-49
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGL 297
            TE+MKDG+DAVADWPILNA+INAVNGASWVSFHHGGGVG+GYSLHAG VIVADGT+ AA R++RVL SDPGMGVIRH DAGY EA+D A ++ V +PGL
Sbjct:  216 TESMKDGTDAVADWPILNALINAVNGASWVSFHHGGGVGMGYSLHAGQVIVADGTDAAAKRIERVLRSDPGMGVIRHADAGYVEAIDVAKKQGVKIPGL 314
[Close]
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: A0A535H4F3_9CHLR (Urocanate hydratase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535H4F3_9CHLR)

HSP 1 Score: 161 bits (408), Expect = 4.420e-49
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGL 297
            TEAMKDGSDA+ADWP+LNA+++  +GA+WVS HHGGGVGIGYS+HAG VIVADGT +AA RL RVLT+DPG GV+RHVDAGYDEA++CA ER V +P L
Sbjct:   52 TEAMKDGSDAIADWPLLNALLSTASGATWVSLHHGGGVGIGYSIHAGQVIVADGTPEAARRLSRVLTNDPGTGVMRHVDAGYDEAIECARERGVKIPML 150
[Close]
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Match: UPI001F0BA5AC (urocanate hydratase n=1 Tax=Longirhabdus pacifica TaxID=2305227 RepID=UPI001F0BA5AC)

HSP 1 Score: 172 bits (435), Expect = 5.780e-49
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 TEAMKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVADGTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGL 297
            TEAM DGSDAVADWPILNA+INAVNGASW+S HHGGGVG+GYSLHAGMVIVADGTEKAA RLQRVLTSDPGMGV+RHVDAGYD A+  A  + VH+P L
Sbjct:  449 TEAMLDGSDAVADWPILNALINAVNGASWISVHHGGGVGMGYSLHAGMVIVADGTEKAAERLQRVLTSDPGMGVVRHVDAGYDTAIHTAKTKGVHIPLL 547
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99685.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4U2NQA1_BACCE1.750e-5282.47Urocanate hydratase (Fragment) n=1 Tax=Bacillus ce... [more]
A0A061PFY0_9BACL1.210e-5076.24Urocanate hydratase n=1 Tax=Geomicrobium sp. JCM 1... [more]
A0A356TQ99_9DELT3.070e-5079.38Urocanate hydratase (Fragment) n=1 Tax=Myxococcale... [more]
UPI001BB31BED3.130e-5082.47urocanate hydratase n=1 Tax=Bacillus paramobilis T... [more]
A0A534W5G6_9DELT7.960e-5079.21Urocanate hydratase n=1 Tax=Deltaproteobacteria ba... [more]
A0A534Y993_9DELT8.340e-5079.21Urocanate hydratase n=1 Tax=Deltaproteobacteria ba... [more]
UPI001ADCD25C1.130e-4982.00urocanate hydratase n=1 Tax=Bacillus sp. 165 TaxID... [more]
A0A2M6ZYW9_9DELT4.030e-4978.79Urocanate hydratase (Fragment) n=1 Tax=Deltaproteo... [more]
A0A535H4F3_9CHLR4.420e-4973.74Urocanate hydratase (Fragment) n=1 Tax=Chloroflexi... [more]
UPI001F0BA5AC5.780e-4982.83urocanate hydratase n=1 Tax=Longirhabdus pacifica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99685contigL-digitata_M_contig99685:644..949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1144275.COCOR_03556
Preferred namehutU
PFAMsUrocanase,Urocanase_C,Urocanase_N
Model size306
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00804
KEGG koko:K01712
KEGG ReactionR02914
KEGG Pathwayko00340,ko01100,map00340,map01100
KEGG ModuleM00045
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-48
EggNOG OGsCOG2987@1|root,COG2987@2|Bacteria,1MU4W@1224|Proteobacteria,42PUK@68525|delta/epsilon subdivisions,2WIN4@28221|Deltaproteobacteria,2YU7Y@29|Myxococcales
EC4.2.1.49
DescriptionCatalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
Cds size297
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408656.2218928-CDS-L-digitata_M_contig99685:643..9401682408656.2218928-CDS-L-digitata_M_contig99685:643..940Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99685 644..940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408656.236103-UTR-L-digitata_M_contig99685:940..9491682408656.236103-UTR-L-digitata_M_contig99685:940..949Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99685 941..949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99685.2.1prot_L-digitata_M_contig99685.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99685 644..940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99685.2.1

>prot_L-digitata_M_contig99685.2.1 ID=prot_L-digitata_M_contig99685.2.1|Name=mRNA_L-digitata_M_contig99685.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=99bp
MKDGSDAVADWPILNAMINAVNGASWVSFHHGGGVGIGYSLHAGMVIVAD
GTEKAAARLQRVLTSDPGMGVIRHVDAGYDEAVDCATERAVHVPGLNR*
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mRNA from alignment at L-digitata_M_contig99685:644..949-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99685.2.1 ID=mRNA_L-digitata_M_contig99685.2.1|Name=mRNA_L-digitata_M_contig99685.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig99685:644..949- (Laminaria digitata LdigPH10_18mv male)
ACGGAGGCGATGAAGGACGGCTCCGACGCCGTCGCGGACTGGCCTATCCT
CAACGCCATGATCAACGCCGTGAATGGCGCAAGCTGGGTTTCGTTTCACC
ACGGAGGTGGCGTGGGCATCGGCTACAGCCTGCACGCCGGCATGGTCATT
GTCGCCGACGGCACCGAAAAGGCCGCCGCGCGCCTTCAGCGAGTGCTGAC
CTCAGACCCGGGCATGGGCGTCATTCGCCACGTCGACGCCGGCTACGATG
AGGCCGTCGACTGCGCCACCGAGCGCGCGGTGCACGTGCCCGGCCTCAAT
CGCTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99685:644..949-

>mRNA_L-digitata_M_contig99685.2.1 ID=mRNA_L-digitata_M_contig99685.2.1|Name=mRNA_L-digitata_M_contig99685.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=297bp|location=Sequence derived from alignment at L-digitata_M_contig99685:644..949- (Laminaria digitata LdigPH10_18mv male)
ATGAAGGACGGCTCCGACGCCGTCGCGGACTGGCCTATCCTCAACGCCAT
GATCAACGCCGTGAATGGCGCAAGCTGGGTTTCGTTTCACCACGGAGGTG
GCGTGGGCATCGGCTACAGCCTGCACGCCGGCATGGTCATTGTCGCCGAC
GGCACCGAAAAGGCCGCCGCGCGCCTTCAGCGAGTGCTGACCTCAGACCC
GGGCATGGGCGTCATTCGCCACGTCGACGCCGGCTACGATGAGGCCGTCG
ACTGCGCCACCGAGCGCGCGGTGCACGTGCCCGGCCTCAATCGCTAA
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