mRNA_L-digitata_M_contig99629.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99629.1.1
Unique NamemRNA_L-digitata_M_contig99629.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99629.1.1 vs. uniprot
Match: A0A6H5L357_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L357_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 9.370e-11
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 LPKRYWFATKDGLFNLFRDANSGPGAPNGPRRKGEG 108
            +P  YWFA KDGL+NLFRD +SGPGAPNG RRKGEG
Sbjct:  216 VPLSYWFAMKDGLYNLFRDPDSGPGAPNGGRRKGEG 251
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BLAST of mRNA_L-digitata_M_contig99629.1.1 vs. uniprot
Match: A0A7R9ZFF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZFF3_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.230e-5
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 LPKRYWFATKDGLFNLFRDANSGPGAPNG 87
            +P RY FA+KDG++NLFRD ++GPGAP G
Sbjct:   10 VPLRYLFASKDGIYNLFRDPDAGPGAPKG 38
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L357_9PHAE9.370e-1177.78Helicase ATP-binding domain-containing protein n=1... [more]
A0A7R9ZFF3_9STRA3.230e-565.52Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99629contigL-digitata_M_contig99629:53..160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr43406
PFAMsDEAD,DSHCT
Model size108
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.00025
EggNOG OGsCOG4581@1|root,KOG0947@2759|Eukaryota,2XC8W@2836|Bacillariophyta
Descriptionnuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
Cds size108
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.5479379-CDS-L-digitata_M_contig99629:52..1601682408655.5479379-CDS-L-digitata_M_contig99629:52..160Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99629 53..160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99629.1.1prot_L-digitata_M_contig99629.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99629 53..160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99629.1.1

>prot_L-digitata_M_contig99629.1.1 ID=prot_L-digitata_M_contig99629.1.1|Name=mRNA_L-digitata_M_contig99629.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=36bp
LPKRYWFATKDGLFNLFRDANSGPGAPNGPRRKGEG
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mRNA from alignment at L-digitata_M_contig99629:53..160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99629.1.1 ID=mRNA_L-digitata_M_contig99629.1.1|Name=mRNA_L-digitata_M_contig99629.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig99629:53..160+ (Laminaria digitata LdigPH10_18mv male)
CTTCCCAAAAGGTACTGGTTCGCGACGAAAGACGGACTGTTCAACCTGTT
CCGCGACGCCAACTCGGGCCCGGGCGCGCCAAACGGCCCTCGAAGGAAGG
GGGAGGGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig99629:53..160+

>mRNA_L-digitata_M_contig99629.1.1 ID=mRNA_L-digitata_M_contig99629.1.1|Name=mRNA_L-digitata_M_contig99629.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig99629:53..160+ (Laminaria digitata LdigPH10_18mv male)
CTTCCCAAAAGGTACTGGTTCGCGACGAAAGACGGACTGTTCAACCTGTT
CCGCGACGCCAACTCGGGCCCGGGCGCGCCAAACGGCCCTCGAAGGAAGG
GGGAGGGT
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